1D7Q,1JT8


Conserved Protein Domain Family
S1_IF1A

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cd05793: S1_IF1A 
Click on image for an interactive view with Cn3D
S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Statistics
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PSSM-Id: 240219
Aligned: 42 rows
Threshold Bit Score: 84.4974
Created: 17-Dec-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
RNA binding
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:A large RNA-binding surface on eIF1A is important for directing the 43S preinitiation complex from the 5' end of the mRNA to the initiation codon, a process referred to as scanning.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             ##   #             ####       #    #                                    
1D7Q_A     32 QEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGk-----lRKKVWINTSDIILVGLrdy-qdNKADVILKYNADEARSLKAY 105 human
AAK42526   22 QTICVVKKMLGGDHLIVLCMDGKERLARIPGk-----iRKKMWMREGDVVLVGIwdf-qpNRCDILYKYGNDEIKRLVNE 95  Sulfolobus solfata...
AAG20357   18 EVFAEVTDMLGANRVQVRCADGEERTARIPGr-----mQKRIWIREDDIVLVEPwdw-qdDKADVTWRYEKSDADQLREE 91  Halobacterium sp. ...
AAV46183    6 EMFAVVTEHLGGNHVRIRCEDGETRLGRIPGr-----mKFRTWINEDDIVLAEPwdw-qdEKANIEWRYKGQDADQLRSE 79  Haloarcula marismo...
Q974Z9     22 EVICVVKKMLGAEHVQVICLDGKERLGRIPGk-----mKKKMWVKEGDVVLAAPwdf-qpNKCDIIYKYSESEVRRLEEE 95  Sulfolobus tokodaii
P57676     23 TMLCIVQRVVGAGFLEVLCTDGEVYMARIPGk-----mRRRVWMREGDVVLFLPwgt-adKKGEVVYRYLRDEVRKLIDM 96  Aeropyrum pernix
AAR38985   24 EVIGIVEQALGWAHYRVKCFDGVERICRVPRprrwtkdKFRFNVAEGNYVLVKPwpn-skDKGDIIYKYDRKQVEALKKL 102 Nanoarchaeum equit...
Q8ZXV9     28 EILGKVIEMLGDGRFKVICADGQIRVARLPGr-----lRRRLWLKAGDYVIVALwdf-drEKGDIVHKYEKRDVEELKRR 101 Pyrobaculum aeroph...
ABK77412  104 EMLGRVIKLLGSDQVLVKCTDEITRRGRIRGk-----lKRRIWIRDNDIVILAPwdfkatERGDIIWRFTLPQVDWLKDN 178 Cenarchaeum symbio...
YP_919836  21 TLLCVIQQLLGFDRARVFCSDGKVRLCRIPGk-----fKKRMWMKVGDVVLVAPwdf-qpERGDIIYRYTSNELQKLEKK 94  Thermofilum penden...
Feature 1        
1D7Q_A    106 GEL 108 human
AAK42526   96 NII 98  Sulfolobus solfataricus P2
AAG20357   92 GHI 94  Halobacterium sp. NRC-1
AAV46183   80 GHI 82  Haloarcula marismortui ATCC 43049
Q974Z9     96 QVV 98  Sulfolobus tokodaii
P57676     97 NLL 99  Aeropyrum pernix
AAR38985  103 GYL 105 Nanoarchaeum equitans Kin4-M
Q8ZXV9    102 GFA 104 Pyrobaculum aerophilum
ABK77412  179 DHL 181 Cenarchaeum symbiosum A
YP_919836  95 GLL 97  Thermofilum pendens Hrk 5

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