Conserved Protein Domain Family
S1_Rrp5_repeat_hs14

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cd05705: S1_Rrp5_repeat_hs14 
S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Statistics
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PSSM-Id: 240210
Aligned: 7 rows
Threshold Bit Score: 127.128
Created: 9-Mar-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
RNA binding
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:RNA binding residues of the RNA PolymeraseII RPB7 subunit, confirmed by mutagenesis

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                    #        #         # #                                          
BAA11502     1334 IKEGQLLRGYVGsiq-phGVFFRLGPSVVGLARYSHVSQHSPskkalYNKHLPEGKLLTARVLRLNHQKNLVELS 1407 human
AAI26004     1302 LEEGQLVSGFVSaitenkGVFFRLSSFIVGHIQFQNVTSYFVyepsaYSNYIPEGTLLTAKVLSIDPDKKHVELS 1376 African clawed frog
XP_421739    1274 VKKGQLVRGYVKsvt-psGVFFGLSASLLGRILFQNVSPYFVqkhslYEKYLPEGKLLTAKVLDVNKKENHVELS 1347 chicken
CAG03343     1922 LKEGQIIRGYVTsvg-kcGIFIRLSSSITGRAELQKSTKYFCsnhsvLCDHLPNGTLITSKIISIDSEEELVSLS 1995 Tetraodon nigrovir...
XP_001378624 1234 IKEGQLLRGYVEaik-kqGIFFRISPTLVGRVKYQHVTTYLPfdralYQTYLPEGKLLSAKVLRVNRKQNLLYLS 1307 gray short-tailed ...
XP_001512041 1320 VKEGELLRGYVKsve-hqGVFISISSTVVGQVQYQCVSQYLVsnqklYNKYLRKGMLLTTKVLSVNKEQNLVELS 1393 platypus
NP_001082837 1275 IKEGQSIRGYVSsvn-dqGIFLRLSRTITGRVLFQNATKYYMndpkvLIKHVGQNALVAAKVLSVDSENLHVNLS 1348 zebrafish

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