Conserved Protein Domain Family
S1_Rrp5_repeat_hs13

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cd05704: S1_Rrp5_repeat_hs13 
S1_Rrp5_repeat_hs13: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 13 (hs13). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Statistics
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PSSM-Id: 240209
Aligned: 7 rows
Threshold Bit Score: 110.519
Created: 13-Nov-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
RNA binding
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:RNA binding residues of the RNA PolymeraseII RPB7 subunit, confirmed by mutagenesis

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                    #        #         # #                                               
BAA11502     1240 LEEGEVAMGRVVKVtpneGLTVSFPFGKIGTVSIFHMSDSYSETPle----------------------dFVPQKVVRCY 1297 human
XP_421739    1180 LEPGTITVGMVAKMiphiGLTITLPGGKAGKVSIFHLSDKYTESPls----------------------dFKIGKVVRCY 1237 chicken
CAG03343     1828 LEEGAVTLGMVIDSdplrGLLVQLPFGSMGSVAVTDLADAYRPNPln----------------------aYRKNQIVRCF 1885 Tetraodon nig...
AAI26004     1209 LEEGAVTVACVTKVvkgsGLTLSLPFGKTGNANMFHLCDKYAEASle----------------------kFTPGKFVRCA 1266 African clawe...
XP_001512041 1226 LKKGTITMGKVMKVipdvGLTVRLPFECAGQVSIFHIQDSYSAVPle----------------------gFKPEKIVKCC 1283 platypus
NP_001082837 1181 LEPGMNTLAMVQKIqphkGLMLALPYENTGLAHLTDLSDSYTEKPle----------------------sYKEGQIIRCH 1238 zebrafish
XP_001631018 1143 LSRDQIVPGRVTRVmptsGLFIQLPLHKSGLVALTDIADHFTENPtdgykvkqivrwlqsqadrtnptdgYKVKQIVRCC 1222 starlet sea a...
Feature 1                        
BAA11502     1298 ILSTad-nvLTLSLR 1311 human
XP_421739    1238 ILSNen-gkIQLSLR 1251 chicken
CAG03343     1886 LLQKin-gkWQLSLR 1899 Tetraodon nigroviridis
AAI26004     1267 ILSNsk--iVKVSLR 1279 African clawed frog
XP_001512041 1284 VLSTkg-tmMELSLR 1297 platypus
NP_001082837 1239 VIEQki-keFNVSLR 1252 zebrafish
XP_001631018 1223 ILSKkdnghYDLSLR 1237 starlet sea anemone

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