Conserved Protein Domain Family
S1_Rrp5_repeat_hs9

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cd05700: S1_Rrp5_repeat_hs9 
S1_Rrp5_repeat_hs9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes Homo sapiens S1 repeat 9 (hs9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Statistics
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PSSM-Id: 240205
Aligned: 3 rows
Threshold Bit Score: 107.246
Created: 6-Sep-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
RNA binding
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:RNA binding residues of the RNA PolymeraseII RPB7 subunit, confirmed by mutagenesis

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 #       #         # #                                    
BAA11502      859 GMFLDLVVQEVLEDGSVVFSGGPVPDLVLKAsrYHRAGQEVESGQKKKVVILNVDLLKLEVHVSL 923  human
XP_421739     808 GKELQLVVQDVMEDGSALFSGGCVRGLTVTAtrYHLGGKNVIPGEKAKGLVLHVDAITSKVYVSL 872  chicken
NP_001082837  833 GDQMKMIVGDTTEDGSVMLTSDQLSGVTVLAskYHKEGVNLTPGCKLNAVILHIDFVKSQVHVSL 897  zebrafish

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