Conserved Protein Domain Family
S1_Rrp5_repeat_hs4

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cd05696: S1_Rrp5_repeat_hs4 
S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 4 (hs4). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Statistics
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PSSM-Id: 240201
Aligned: 12 rows
Threshold Bit Score: 89.6291
Created: 15-Mar-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
RNA binding
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:RNA binding residues of the RNA PolymeraseII RPB7 subunit, confirmed by mutagenesis

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 #         #          # #                                           
BAA11502      378 GAVLDDVPVqgffkKAGATFRLKD-GVLAYARLSHLSDsknvf---npeaFKPGNTHKCRIIdysqmDELALLSL 448  human
XP_421739     323 GAVVEESTVkafykQFGAVFQLDD-GMLAFARPKHLSKtrksf---kpaaFKAGCKHKCRIIdyslmDEMCIVSL 393  chicken
NP_001082837  357 GEVVQGCQMtslhhYSGALMKMLD-GSRAFVHRNLLKEpkeel---dtnhLMSQTQHILRIInyspiEQIYQATL 427  zebrafish
CAG03343      314 GEVVKSCKMtvvhhMSGAVLELPD-KTTAFAHKNHLKEpkeql---nenrLLAMPEHSCRILdfslmDNIHFVTL 384  Tetraodon nigrovir...
AAI26004      361 GSVLDNCVVqtlfkNAGAVFELEG-GNLGFAFKHHLSAskqp----hfekFKKGTTHKGRITdfspmDEMHILSL 430  African clawed frog
XP_775399     438 GKVYQSVKVtrvlnDWGVMVRTQD-GLEGFVHISHLADeripvlsnatpqFKAGTLHRARVIghspmDGVLLLSF 511  Cryptococcus neofo...
EAU92721      430 GHILDSVKVvkvepERGLFLEVAP-GQEGFAHISHISDdhlpsv-sptgpWKVNTLHRARVTgyhsfDGLLQLSL 502  Coprinopsis cinere...
EAT82616      459 STIIDNAKVvkvapALGAFFELGVrDVLGFAHISRLSDdrvdvlsedagaYKLGSTHRARIVgynsiDGLFQLSL 533  Phaeosphaeria nodo...
XP_756825     496 GAILKVTVVqt-inDWGLVVSVHDtDLRGFVHISQVSDdhvvslppssgpFAKETVHKARVVghsptDRTLQLSL 569  Ustilago maydis 521
XP_001631018  389 GDIFDNVTItrgdqGLGLLANVKD-GLNGFVHFSQVSDkqiek---lgkkYKAGTSHKCRVLgmntiDGLLSLTT 459  starlet sea anemone
XP_001537858  428 SAIVPEVKVtkvepGLGVYAQFND-KHYGFVHISRLSDdkvdsisstqgpYMVDSTHEARIVgfsalDNLYLLSL 501  Ajellomyces capsul...
XP_359517     464 SSIVEQCTVtkvepDIGLFVDTGIeGVPGFVHISRVKDgkvdalyeasgpYKTGSVHRGRIVgynsmDGMYHLSF 538  Magnaporthe grisea...

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