Conserved Protein Domain Family
S1_Rrp5_repeat_hs3

?
cd05695: S1_Rrp5_repeat_hs3 
S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 3 (hs3). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Statistics
?
PSSM-Id: 240200
Aligned: 11 rows
Threshold Bit Score: 85.7917
Created: 15-Mar-2007
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
RNA binding
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:RNA binding residues of the RNA PolymeraseII RPB7 subunit, confirmed by mutagenesis

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                 #       #         # #                                                   
BAA11502      294 GLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPkka------------------------------gtYFSNQAVRAC 343  human
XP_421739     239 GLVVKAQVQKVAPLGVSLTFLSSFTGIVDFMHVDPeks------------------------------tnYSPNQMVKAC 288  chicken
NP_001082837  272 GLLIHGCVKRVTPHGLIVTFLSSFTGVVDFLHLDEdke------------------------------stYSKGQEILAR 321  zebrafish
AAI26004      277 GLVFKAQIEKVMHNNITLSFLSSYTGFVDFLHFEPkki------------------------------gsYKEGQEVKAC 326  African clawe...
CAG03343      198 GLLVNATIKKVTKHGLILDFLSSFTGQVDFLHMEPeqassykegdqvklsllllipvfsdfklecsmkpcSAPPTQVRAR 277  Tetraodon nig...
NP_187803     256 GMMVNARVQSVLENGILFDFLTYFNGTVDLFHLKNplsnk-------------------------swkdeYNQNKTVNAR 310  thale cress
XP_637477     374 GMLVETKVLRVLSNGLHLGFLDFFAGDIFILHSQNpi-------------------------------etYKENQGVKAR 422  Dictyostelium...
XP_001184696  293 GTRLDAMVTKVLSNSLIMDIFGLYKGCVDPIHLKDtvde----------------------------ltkYDIGQKLVAV 344  purple urchin
XP_001631018  301 GMLVNTRVSQCTSSGVIVSFLELFEGSVHILHLPEnggsge------------------------nleklYKKKSKHVAR 356  starlet sea a...
CAL55958      321 GMLVNSRVKQVLADGILCSFMTFFSGTVDCFQTGSvattk-------------------------gvasaFKVGQRMRAR 375  Ostreococcus ...
XP_001020230  334 GNLVNAVILKVLNNGLIVRFLKQFIGFIFEDHLDKei-------------------------------saYKEKEKLLAR 382  Tetrahymena t...
Feature 1                       
BAA11502      344 ILCVHPRTRVVHLS 357  human
XP_421739     289 ILSTHPTSKVVRLT 302  chicken
NP_001082837  322 ILYVQPSTRQVGLS 335  zebrafish
AAI26004      327 ILWLDPSTKTIRLT 340  African clawed frog
CAG03343      278 VLYVEPSTRLVALS 291  Tetraodon nigroviridis
NP_187803     311 ILFIDPSSRAVGLT 324  thale cress
XP_637477     423 ILFVDQVHKRIGLS 436  Dictyostelium discoideum AX4
XP_001184696  345 VLYNCPTTKSIGLS 358  purple urchin
XP_001631018  357 ILYVNPKNKVVSLS 370  starlet sea anemone
CAL55958      376 VIFVDAVAKRVCLT 389  Ostreococcus tauri
XP_001020230  383 IIASDFDQKQINLS 396  Tetrahymena thermophila SB210

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap