Conserved Protein Domain Family
S1_RPS1_repeat_hs4

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cd05692: S1_RPS1_repeat_hs4 
S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1 homolog. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Statistics
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PSSM-Id: 240197
Aligned: 12 rows
Threshold Bit Score: 99.6673
Created: 14-Nov-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
RNA binding
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:RNA binding residues of the RNA PolymeraseII RPB7 subunit, confirmed by mutagenesis

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #       #         # #                                         
AAA77669    293 GSVLEGTVKRVKDFGAFVEIlpgIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKpaeERISLSMK 362 human
NP_295477    12 GAVAEGRITRVTDFGAFVQFengETGLVHISQIAHSFVRNIHDHVREGENVEVKVLGRDe-rGRLDLSIK 80  Deinococcus radiodurans R1
NP_387944     6 GSKLQGKITGITNFGAFVELpggSTGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEk-dGKIGLSIK 74  Bacillus subtilis subsp. s...
YP_005355    23 GTVVEGRVVRVVSFGAFVELaggEQGLVHISQIAHEYVTNVRDYLNEGDIVQVLIKGRDa-kGRLDLSIK 91  Thermus thermophilus HB27
ZP_01353373 198 GIVTTGIVDKLMPFGAFVSIgegLSGLVHISQICGKRIKSPAEVLKEGQEVKVKVLDVKd--GKISLSIK 265 Clostridium phytofermentan...
YP_752817    11 GSIMEGKVQGITKFGAFIELpggVVGLVHISEIADTYVKDVKDFIKEGESVKVKVLNVAg--KKIGLSIK 78  Syntrophomonas wolfei subs...
ZP_01964663 196 GLVTEGTVESLQPYGAFVNLgngLSGLVHISQICEKRIKKPSEVLAVGDTVKVKVTAIKd--GKLSLSIK 263 Ruminococcus obeum ATCC 29174
ZP_02034923   6 GSILEGKVTGLTKFGAFVSLpegKSGLVHISEIAYSYVNDVKDYLKEGQEVKVKVIGIDe-nGRINLSIK 74  Bacteroides capillosus ATC...
P50889      316 GSVLEGTVKRVKDFGAFVEIlpgIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKpaeERISLSMK 385 Leuconostoc lactis
P29344      261 GSVVTGTVQSLKPYGAFIDIg-gINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDrerGRVSLSTK 329 spinach
AAP79181    296 GDVVVGTVTALKPYGAFINLg-gVNGLLHISQISHDHVTSVKDVMDVGQKLKVMIMSRDq-nGRVSLSTK 363 Bigelowiella natans
CAL52583    136 GDVVEGMVQAVKPYGAFVDVg-gQSGLLHISQISHERIVAVENVLSAGDRIKVLVMSKDaerGRLSLSTK 204 Ostreococcus tauri

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