Conserved Protein Domain Family
S1_RPS1_repeat_ec6

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cd05691: S1_RPS1_repeat_ec6 
S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 6 (ec6) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Statistics
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PSSM-Id: 240196
Aligned: 19 rows
Threshold Bit Score: 88.8668
Created: 9-Mar-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
RNA binding
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:RNA binding residues of the RNA PolymeraseII RPB7 subunit, confirmed by mutagenesis

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                #       #           # #                                            
NP_286786    451 GAIVTGKVTAVDAKGATVELa--DGVEGYLRASeasrdrvedatlvLSVGDEVEAKFTGVDRKNRAISLSVRAKD 523 Escherichia coli O15...
ZP_01167043  451 GSIVKGQVSNVTDKALSVTLa--EGVEASLKIAdvsrdridnlserFTVGDEVEAVISNIDRRNRVITLSIKQLE 523 Oceanospirillum sp. ...
ZP_02000546  453 GSIVKGVVSEVENTKAVIQLg--EGVEGFLRAQeiayervddarrfLKETEEIEAKVIGVDRKKRMINLSIKALL 525 Beggiatoa sp. PS
YP_001209043 452 GSVVSGKIVELDERQATVNLa--EGVNGVLRAAeaaiervedltklFAVGDEIEAKVLNIDRKHKSIALSIRAKD 524 Dichelobacter nodosu...
NP_819560    447 DAVIQAKVKEVESKQAVLELa--DQVLGQMRLAdytydrvkdltqeLNVGDEVAVKIVNVDRKNRLINVSHKAVE 519 Coxiella burnetii RS...
YP_745843    462 GDVVTCVVTAVQANGIEVKVg--DVLSGFIRRAelsrdkadqrpdrFAVGEKVDAKVTAVDRAARKLQLTIKGKE 534 Granulibacter bethes...
YP_864105    462 GNVVMGKVKEVLSSGVLVQLa--DEVDGHIRKAefsqdd--regtnLTLETEVECRVMQVDRQKRKISLSIKAME 532 Magnetococcus sp. MC-1
ZP_01300851  450 DQRVKGKIIEINDEGMKVDLg--NHVEAQLKVAeyge-----egknFEIGQEIEAKILSLDRKNHYISLSLLALE 517 Rickettsiella grylli
ZP_00958038  457 GETVTCTVTEITTGGIEVTLgpdNLVKAFIRKSdisrdraeqrperFAVGDKVDARVTNIDKASRRVSVSIKALE 531 Oceanicaulis alexand...
YP_425385    461 NQIVTCVITMVQENGIEVDV---NGAIGFIRKSdlareradqrperFAVGEKVDAKVINMDKSNRRMTLSIKARE 532 Rhodospirillum rubru...

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