Conserved Protein Domain Family
S1_RPS1_repeat_ec5

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cd05690: S1_RPS1_repeat_ec5 
S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 5 (ec5) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Statistics
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PSSM-Id: 240195
Aligned: 5 rows
Threshold Bit Score: 124.143
Created: 9-Nov-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
RNA binding
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:RNA binding residues of the RNA PolymeraseII RPB7 subunit, confirmed by mutagenesis

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #       #         # #                                          
NP_286786   364 GDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDA--ERERISLG 432 Escherichia coli O157:H7 ...
NP_284231   365 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDV--EKERISLG 433 Neisseria meningitidis Z2491
YP_461295   388 GTLIKGVIRNVTNFGIFVGVEDGIDGLVHVSDISWKQRVKHPSEIYKKGQEIEAVVLNIDV--ESEKFSLG 456 Syntrophus aciditrophicus SB
EAY57174    272 GAVVSGKIKSLTDFGAFVGLDEGIDGLIHISDMSWTKHVRHPSEVFKKGQKVEVVVLKIEK--ERQRLSLG 340 Leptospirillum sp. Group ...
ZP_01908737 375 GTVVAGVIRNIADFGVFVELEPGIDGLVHITDLSWTQRVRHPSDIYKKGDEVQAAVLNIDNsgEKPKISLG 445 Plesiocystis pacifica SIR-1

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