Conserved Protein Domain Family
S1_RPS1_repeat_ec4

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cd05689: S1_RPS1_repeat_ec4 
S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (ec4) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Statistics
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PSSM-Id: 240194
Aligned: 4 rows
Threshold Bit Score: 129.234
Created: 9-Nov-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
RNA binding
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:RNA binding residues of the RNA PolymeraseII RPB7 subunit, confirmed by mutagenesis

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  #       #         # #                                        
NP_286786   274 YPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIhPSKVVNVGDVVEVMVLDIDEERRRISLG 345 Escherichia coli O157:H7...
NP_660643   274 YPEGIKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIhPSKVVAVNNIVDVIVLDIDEERRRISLG 345 Buchnera aphidicola str....
YP_113870   274 YPAGTRLFGKVSNLTDYGCFVELEEGVEGLVHVSEMDWTNKNVnPAKVVQLGEEVEVMVLDIDEERRRISLG 345 Methylococcus capsulatus...
ZP_01521593 274 YPSATRLFGKVTNIADYGAFVELEPGIEGLVHVSEMDWTNKNIaPTKLVSLGDEVEVMVLEIDEDKRRISLG 345 Comamonas testosteroni KF-1

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