Conserved Protein Domain Family
S1_RPS1_repeat_ec3

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cd05688: S1_RPS1_repeat_ec3 
S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 3 (ec3) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Statistics
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PSSM-Id: 240193
Aligned: 20 rows
Threshold Bit Score: 87.2991
Created: 9-Nov-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
RNA binding
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:RNA binding residues of the RNA PolymeraseII RPB7 subunit, confirmed by mutagenesis

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 #       #              # #                                       
NP_286786    191 EGMEVKGIVKNLTDYGAFVDlg------gVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLG 258 Escherichia coli O157...
NP_966811    218 EGDIIEGKIKSITHYGVFVGihesdvvgvIDGLLHITDISWSRVSHPSAVFTCGQTIKVKIIKIDKENAKISLG 291 Wolbachia endosymbion...
ZP_00769424   99 PGDVLVGRVNQLTNFGAFIDlg------gADGLAHISELSWQRVNHPREVLQPGQEVKVVVVEIDRERERIGLS 166 Chloroflexus aurantia...
ZP_01855995  366 IGQEHTGTVKNIKDYGAFVDlg------gIDGFLHIGEISWNRIKHPKDALSEHQQINVKILKIDKEKNRISLG 433 Planctomyces maris DS...
YP_001394210 119 KGDKIEGRVSRITNFGVFVDlg------gVEGLVHISELSWKKIKDPSEVVSVGDKLKVYVLNLNQDRNRISLS 186 Clostridium kluyveri ...
YP_075499    230 EGDVLEGTVKSITDFGAFIDlg------gVDGLLHISEMSYGRIKHPSQVVSEGERIKVKVLRLDREKGKVSLG 297 Symbiobacterium therm...
ZP_02036340  477 EGKKYTGTVKSLTSYGAFVDig------gVDGMVHISELSWSRIKHPSEVVKVGDTVEVYVISFDKEKKKISLG 544 Bacteroides capillosu...
EDP20353     473 VGKTYTGVVKSLTSYGAFVDig------gVDGLCHISELSWNRIKHPSEVVSVGDTIEVYVKDIDTENHKVSLG 540 Faecalibacterium prau...
ZP_00769346  228 EGDVRDGVVSSVCDFGVFVDig------gADGLVHLSEISWSRVKHPGEVLKVGDKVKVAILNIDHERKRIALS 295 Chloroflexus aurantia...
NP_696164    208 KGQIREGVVSSIVNFGAFVDlg------gVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLS 275 Bifidobacterium longu...

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