Conserved Protein Domain Family
S1_RPS1_repeat_ec1_hs1

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cd05687: S1_RPS1_repeat_ec1_hs1 
S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 1 of the Escherichia coli and Homo sapiens RPS1 (ec1 and hs1, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Statistics
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PSSM-Id: 240192
Aligned: 56 rows
Threshold Bit Score: 59.8503
Created: 9-Mar-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
RNA binding
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:RNA binding residues of the RNA PolymeraseII RPB7 subunit, confirmed by mutagenesis

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #        #          # #                                             
NP_286786    21 GSIVRGVVVaid-kdVVLVDAGl-KSESAIPAEQfknaq---geleiQVGDEVDVALdave----dgfGETLLSRE 87  Escherichia coli O15...
NP_390169    16 GDVVKGIVTkve-dkHVDVEIInvKQSGIIPISElsslhvekasdvvKVDDELDLKVtkv------edDALILSKR 84  Bacillus subtilis su...
NP_692721    14 GTTVTGTVVkle-dkQVLVDIGy-KTEGILPIGElsslhveattdvlTEGDTVTLKVkki------ddDEIILSKR 81  Oceanobacillus iheye...
ZP_00540643  16 DQVVTGTVVkie-dkQALIDIGy-KTEAILPISEvsslhlddiqgalKVGDELQVKVkki------tdEEVVVSKR 83  Exiguobacterium sibi...
ABM55769     14 GSLVTGSVTkid-knQALIKIAe-DIEAILPISElsclrinevgdmlKLDDELELEVlrld----eeeNKFILSKR 83  Pasteuria ramosa
NP_242502    18 GDVVSGKVTkve-dkQAFVDVGf-KVDGIIPISElsslhvekvsdvlSEGDELELKVlkv------edDELILSKR 85  Bacillus halodurans ...
YP_148078    15 GDIVRGKVVkle-dkQVLVEVEnsKQSGIIPISElsnlhiekpsdavAVGDEVTAKVkkveegkdgeeGLLILSKR 89  Geobacillus kaustoph...
YP_806599    26 GDTVKADVLave-dkQLIVGIEgtGVEGVVPIKElstqpiddihdvaKVGDKLDLVVlstvg-kdkenGQFLLSKR 99  Lactobacillus casei ...
AAA77669     32 GDVVTGELLaidndnQAVVGLSt-GEEGVVPAREysddrninladelKIGDTIEAVVisnvt-sdkegVAYLLSKK 105 human
NP_764720    16 GDKVTGEVQqve-dkQVVVHINggKFNGIIPISQlsthhienpsevvKVGDEVEAYVtkiefdeendtGAYILSKR 90  Staphylococcus epide...

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