Conserved Protein Domain Family
Bromo_polybromo_IV

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cd05518: Bromo_polybromo_IV 
Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Statistics
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PSSM-Id: 99949
Aligned: 9 rows
Threshold Bit Score: -1
Created: 13-Sep-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative acetyllysine binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                        #    #  #                                      # 
AAP34197      519 RKQRMKILFNVVLEarepgsGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNAR 598  human
CAG06951      588 KKNRMKALFAAVTEareagtSRRLCDLFMVKPSKKDYPDYYKVILEPMDLRTIEQNIRNERYNTEEALMDDMKLMFRNAR 667  Tetraodon nig...
951231        517 RKQRMKILYNAVLEaresgtGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKMIEHNIRNDKYVGEEAMIDDMKLMFRNAR 596  chicken
AAH84946      542 RKQRMKILFNTVLEarepatGRRLCELFMFKPSKKDYPDYYKIILEPMDLKTMEQNIRSEKYATEETMMNDMKLMFRNAM 621  African clawe...
AAF56339      512 IKKKILSIQKYLVDys--lgNRRPIEMFMEKPPRKIYPDYYDIIQNPIDMNTIEHNIRTDRYAAVEDVVSDYRLMFSNCR 589  fruit fly
XP_625055     529 LKKRLYALVKCVIEyv--vnGRQPMLMFMEKPSKKLYPDYYQVIAEPIDMLAIEANIKAEKYQNENELIQDFKLMFNNCR 606  honey bee
EAT48776      503 LRKKLLSLHEYMLQyt--vnGRQPMGLFIEKPSKKLYPDYYQVIQHPIDMTTIENNIKSDRYGVLDDAVGDYRLMFSNCR 580  yellow fever ...
XP_001626082  482 SHPLYLFINLYLFTpqd-gsGRQLCIIFQKLPSRAEYPDYYKVISEPVCLSQIEGNIRDNKYATEEELLLDFEVMFDNAR 560  starlet sea a...
XP_796375     576 QKSKLMALYLSLVHyke-esGRSPITLFMEKPSKKEYPDYYHIITEPIDMKTIETNIKNEKYQTEEGVMKDFSLMFDNAR 654  purple urchin
CAG06951      588 KKNRMKALFAAVTEareagtSRRLCDLFMVKPSKKDYPDYYKVILEPMDLRTIEQNIRNERYNTEEALMDDMKLMFRNAR 667  Tetraodon nig...
951231        517 RKQRMKILYNAVLEaresgtGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKMIEHNIRNDKYVGEEAMIDDMKLMFRNAR 596  chicken
AAH84946      542 RKQRMKILFNTVLEarepatGRRLCELFMFKPSKKDYPDYYKIILEPMDLKTMEQNIRSEKYATEETMMNDMKLMFRNAM 621  African clawe...
AAF56339      512 IKKKILSIQKYLVDys--lgNRRPIEMFMEKPPRKIYPDYYDIIQNPIDMNTIEHNIRTDRYAAVEDVVSDYRLMFSNCR 589  fruit fly
XP_625055     529 LKKRLYALVKCVIEyv--vnGRQPMLMFMEKPSKKLYPDYYQVIAEPIDMLAIEANIKAEKYQNENELIQDFKLMFNNCR 606  honey bee
EAT48776      503 LRKKLLSLHEYMLQyt--vnGRQPMGLFIEKPSKKLYPDYYQVIQHPIDMTTIENNIKSDRYGVLDDAVGDYRLMFSNCR 580  yellow fever ...
XP_001626082  482 SHPLYLFINLYLFTpqd-gsGRQLCIIFQKLPSRAEYPDYYKVISEPVCLSQIEGNIRDNKYATEEELLLDFEVMFDNAR 560  starlet sea a...
XP_796375     576 QKSKLMALYLSLVHyke-esGRSPITLFMEKPSKKEYPDYYHIITEPIDMKTIETNIKNEKYQTEEGVMKDFSLMFDNAR 654  purple urchin
Feature 1           #     #               
AAP34197      599 HYNEEGSQVYNDAHILEKLLKEKR 622  human
CAG06951      668 HYNEEGSQVYNDADILEKILKDKR 691  Tetraodon nigroviridis
951231        597 HYNEEGSQVYNDAHMLEKILKEKR 620  chicken
AAH84946      622 HYNEEGSQVYNDAHVLEKFLKDKK 645  African clawed frog
AAF56339      590 QYNEEGSNIYEDANILERALNEKL 613  fruit fly
XP_625055     607 QYNEEGSLIYEDANTLERVLMDKV 630  honey bee
EAT48776      581 KYNEEGSMIYEDANILEKALNEKL 604  yellow fever mosquito
XP_001626082  561 YYNEEESQVYQDACLLEKVLRKKK 584  starlet sea anemone
XP_796375     655 HYNEEGSMVYEDANLLEALLKDKF 678  purple urchin
CAG06951      668 HYNEEGSQVYNDADILEKILKDKR 691  Tetraodon nigroviridis
951231        597 HYNEEGSQVYNDAHMLEKILKEKR 620  chicken
AAH84946      622 HYNEEGSQVYNDAHVLEKFLKDKK 645  African clawed frog
AAF56339      590 QYNEEGSNIYEDANILERALNEKL 613  fruit fly
XP_625055     607 QYNEEGSLIYEDANTLERVLMDKV 630  honey bee
EAT48776      581 KYNEEGSMIYEDANILEKALNEKL 604  yellow fever mosquito
XP_001626082  561 YYNEEESQVYQDACLLEKVLRKKK 584  starlet sea anemone
XP_796375     655 HYNEEGSMVYEDANLLEALLKDKF 678  purple urchin

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