2HF8,2HF9,2WSM,4LPS


Conserved Protein Domain Family
HypB

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cd05390: HypB 
Click on image for an interactive view with Cn3D
nickel incorporation protein HypB
HypB is one of numerous accessory proteins required for the maturation of nickel-dependent hydrogenases, like carbon monoxide dehydrogenase or urease. HypB is a GTP-binding protein and has GTP hyrolase activity. It forms homodimer and is capable of binding two nickel ions and two zinc ions. The active site is located on the dimer interface. Energy from hydrolysis of GTP is used to insert nickels into hydrogenases.
Statistics
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PSSM-Id: 349775
Aligned: 26 rows
Threshold Bit Score: 292.963
Created: 31-Aug-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 19 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:The active site is located in dimer interface
  • Structure:2HF8; Methanocaldococcus jannaschii HypB with bound MgGTP, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                 ########                          #  #              
2HF8_A     18 ILKANKRLADKNRKLLNKhgVVAFDFXGAIGSGKTLLIEKLIDnlkdkykIACIAGDVIaKFDAERXEk-HGAKVVPLNT 96  Methanocaldococcus...
2HF9_A     18 ILKANKRLADKNRKLLNKhgVVAFDFMGAIGSGKTLLIEKLIDnlkdkykIACIAGDVIaKFDAERMEk-HGAKVVPLNT 96  Methanocaldococcus...
4LPS_A     26 ILSKNDIKAAEMKERYLKegLYVLNFMSSPGSGKTTMLENLADfkd--fkFCVVEGDLQtNRDADRLRk-KGVSAHQITT 102 Helicobacter pylor...
CBL05752    9 ILGRNDEIAGKNKSLFDKhgILAINLLGSPGSGKTTLLERTIAhlkndlrLAVIEGDLFtDKDADRIAq-HNVPVIQINT 87  Megamonas hypermeg...
CBL08985   13 IFESNDKQAALLREELKKdgVFLLNLMSSPGSGKTTTLTRTIEalkddlkIGVMEADIDsDVDAETILk-TGAKAIQLHT 91  Roseburia intestin...
CBL27131   13 VFADNDATSKAIREKMSAqgTLFLNVMSGPGSGKTTLLSALINrikeqlrIGEMDVDIEtSLDAQRVTdlTGVESIQIHN 92  Ruminococcus torqu...
CBK89009    9 IMDWNQDVSDQVKETLKEhhTVLINIMGSPGAGKTSLIKNIIEqlrdtfsIGVIEGDITtDIDAKTIAe-MNVPSVELNT 87  Eubacterium cylind...
CBL04116    9 ILDKNDQLASELRARFAEnkVFVLDLLASPGSGKTSTILATIDalrdefnIAVIEGDIAsNVDAEKIKa-QGIPAVQINT 87  Gordonibacter pame...
CBX27991   36 ILSDNERLADELRKQLAKekTFLLNLMASPGAGKTSLILKTIDalkddlrIAVIEADIDsIVDSEKVAa-VGIPAVQLRT 114 uncultured Desulfo...
EGC78301   13 VYETNNAHAEKLRKKLKEekKFLLNLMSSPGSGKTTLLKASIEalkkdfrIGVMEADLDsAVDAETISq-TGAKVIQLHT 91  Treponema denticol...
Feature 1                                     #  #                                           #
2HF8_A     97 GkeCHLDAHLVGHALEDLnld----eiDLLFIENVGNLICPADFDLGThKRIVVISTTEGDDTIEKHPGIXKTAdLIVIN 172 Methanocaldococcus...
2HF9_A     97 GkeCHLDAHLVGHALEDLnld----eiDLLFIENVGNLICPADFDLGThKRIVVISTTEGDDTIEKHPGIMKTAdLIVIN 172 Methanocaldococcus...
4LPS_A    103 GeaCHLEASMIEGAFDLLkdegaleksDFLIIENVGNLVCPSSYNLGAaMNIVLLSVPEGDDKVLKYPTMFMCAdAVIIS 182 Helicobacter pylor...
CBL05752   88 NggCHLDAPMVEEVLGDLdld----klDVVIIENVGNLVCPAEFVVGEdMKVTVLSITEGDDKPLKYPIIFKESkVAILN 163 Megamonas hypermeg...
CBL08985   92 GgmCHLDADMTRQGLKGLgte----dvELVILENVGNLVCPAEFDTGAvKNAMILSVPEGHDKPLKYPLMFSICdVVLIN 167 Roseburia intestin...
CBL27131   93 CglCHVDADMVSRALFEYdte----nlDLLILENIGNLVCPAEFDTGAhKNVMLLSVPEGDDKPLKYPLMFQVSdLVLIN 168 Ruminococcus torqu...
CBK89009   88 DgaCHIEAMSIQNILKDFkld----siDVLLVENIGNLVCPAEFDIGEnMRITILSVPEGDDKVVKYPLMFTDTdCLVIN 163 Eubacterium cylind...
CBL04116   88 GgaCHLESAMLKRAVDVLdla----rlDLIIVENVGNLVCPTDFDLGEnAKVMILSVPEGDDKPLKYPGVFQVAeAVVLN 163 Gordonibacter pame...
CBX27991  115 GgfCHLDASMVKKGLDTMdln----afDLIFIENVGNLVCPAEFDTGAvKNAMILSVPEGDDKPLKYPLMFTVCdVLIVN 190 uncultured Desulfo...
EGC78301   92 GgmCHLDADMTEQGLEALgik----dlDLIFLENIGNLICPAEFDTGAlKNVMILSVPEGDDKPLKYPPMFQVCdVLLIT 167 Treponema denticol...
Feature 1     # ##                           ###              
2HF8_A    173 KIDLAdAVGADIKKXENDAKRINPdaEVVLLSLKTXEGFDKVLEFIEK 220 Methanocaldococcus jannaschii
2HF9_A    173 KIDLAdAVGADIKKMENDAKRINPdaEVVLLSLKTMEGFDKVLEFIEK 220 Methanocaldococcus jannaschii
4LPS_A    183 KADMVeVFNFRVSQVKEDMQKLKPeaPIFLMSSKDPKSLEDFKNFLLE 230 Helicobacter pylori 26695
CBL05752  164 KVDILpFTNFDMEAAKHDLKCIHPqlEIMETAASKDVGVDKWCDFIRS 211 Megamonas hypermegale ART12/1
CBL08985  168 KIDVMpYFDFDLEQCKKNILMRNPnaKIIPICAKTGEGMEEWVDWLKK 215 Roseburia intestinalis M50/1
CBL27131  169 KIDTLeYFDFDFELAKERILKLNPnaVVLPVSAKTGEGLEQVIDWIMK 216 Ruminococcus torques L2-14
CBK89009  164 KIDVLpYFDFDLERVQNDYHGINPnaPFFSVSTKDKKGLNEFIDHLKE 211 Eubacterium cylindroides T2-87
CBL04116  164 KVDTLpVFNFDREAFESAVRQLNPqaPIFPIAATKGDGVEAWAEWLAD 211 Gordonibacter pamelaeae 7-10-1-b
CBX27991  191 KMDFLeLTDFDMQKLRERVMILNPeiRIIEVSCRAGHGIDIWADWLRN 238 uncultured Desulfobacterium sp.
EGC78301  168 KMDASsFFNFSLEKCTEYVKKLNPniKIFPVSALKGDGMEAWIEWLRS 215 Treponema denticola F0402

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