1AHI,3GAF


Conserved Protein Domain Family
7_alpha_HSDH_SDR_c

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cd05365: 7_alpha_HSDH_SDR_c 
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7 alpha-hydroxysteroid dehydrogenase (7 alpha-HSDH), classical (c) SDRs
This bacterial subgroup contains 7 alpha-HSDHs, including Escherichia coli 7 alpha-HSDH. 7 alpha-HSDH, a member of the SDR family, catalyzes the NAD+ -dependent dehydrogenation of a hydroxyl group at position 7 of the steroid skeleton of bile acids. In humans the two primary bile acids are cholic and chenodeoxycholic acids, these are formed from cholesterol in the liver. Escherichia coli 7 alpha-HSDH dehydroxylates these bile acids in the human intestine. Mammalian 7 alpha-HSDH activity has been found in livers. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.
Statistics
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PSSM-Id: 187623
Aligned: 5 rows
Threshold Bit Score: 369.976
Created: 4-May-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
1AHI_A     13 CAIITGAGAGIGKEIAITFATAGASVVVSDINadaanhvVDEIQQl-GGQAFACRCDItseQELSALAdfaISKLGKVDI 91  Escherichia coli
3GAF_A     14 VAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKsegaeavAAAIRQa-GGKAIGLECNVtdeQHREAVIkaaLDQFGKITV 92  Brucella melitensi...
AAL51586   15 NVIITGGAQNIGAGIAKTLSGAGAKVMIADLNgdkarqtAAAIQKetGNECHGMKCDVtslSDIEQVVretVSAFGGIST 94  Brucella melitensi...
YP_747292  13 VAIVTGGGNGIGKACARMLADYGAAVVIADLKtedaqkaADEITSn-GGQALAIECNVlrdEDLVRLVertVSECGGIHI 91  Nitrosomonas eutro...
YP_222288  13 VAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKsegaeavAAAIRQa-GGKAIGLECNVtdeQHREAVIkaaLDQFGKITV 91  Brucella abortus b...
Feature 1                                  #                           #            #   #     
1AHI_A     92 LVNNAGGGGPKPFDMpm---aDFRRAYELNVFSFFHLSQLVAPEMeknGGGVILTITSMAAENKNINMTSYASSKAAASH 168 Escherichia coli
3GAF_A     93 LVNNAGGGGPKPFDMpm---sDFEWAFKLNLFSLFRLSQLAAPHMqkaGGGAILNISSMAGENTNVRMASYGSSKAAVNH 169 Brucella melitensi...
AAL51586   95 LVNNVGWGGRHEDPTait-eeDFIAAYKLNTISAYRMSMACLPHLlksQNATITNSGSFSSAVPAYDILAYGTAKAALNQ 173 Brucella melitensi...
YP_747292  92 LVNNAGGGGAGRESPdqisveQFAKVFQLNLFSAWRLAQLCAPHMkqaGYGSIITMSSMSSINKSPAISAYASSKAAINH 171 Nitrosomonas eutro...
YP_222288  92 LVNNAGGGGPKPFDMpm---sDFEWAFKLNLFSLFRLSQLAAPHMqkaGGGAILNISSMAGENTNVRMASYGSSKAAVNH 168 Brucella abortus b...
Feature 1                                                                                     
1AHI_A    169 LVRNMAFDLgekNIRVNGIAPGAILTDALksvitp--eieqkMLQHTPIRRLGQPQDIANAALFLCSPAasWVSGQILTV 246 Escherichia coli
3GAF_A    170 LTRNIAFDVgpmGIRVNAIAPGAIKTDALatvltp--eieraMLKHTPLGRLGEAQDIANAALFLCSPAaaWISGQVLTV 247 Brucella melitensi...
AAL51586  174 MMVSLAHMLa-kKVRINSVLIGTVMTEGYgsagideemqeklRHPDNLTGRAGRPEDIANTMLWLCSPAsgWVSGQTINV 252 Brucella melitensi...
YP_747292 172 MTANLAFDYgadEIRVNAVGPGAVRTGALasvltp--eieerMLAHTPLKRLGEPEDIAGAVLYFAAPVsrWVSGQVLFV 249 Nitrosomonas eutro...
YP_222288 169 LTRNIAFDVgpmGIRVNAIAPGAIKTDALatvltp--eieraMLKHTPLGRLGEAQDIANAALFLCSPAaaWISGQVLTV 246 Brucella abortus b...
Feature 1           
1AHI_A    247 SGGGVQ 252 Escherichia coli
3GAF_A    248 SGGGVQ 253 Brucella melitensis biovar Abortus 2308
AAL51586  253 HGGGGV 258 Brucella melitensis 16M
YP_747292 250 NGGGVQ 255 Nitrosomonas eutropha C91
YP_222288 247 SGGGVQ 252 Brucella abortus biovar 1 str. 9-941

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