1H5Q,3GDF,3CTM,1H5Q


Conserved Protein Domain Family
MDH-like_SDR_c

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cd05352: MDH-like_SDR_c 
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mannitol dehydrogenase (MDH)-like, classical (c) SDRs
NADP-mannitol dehydrogenase catalyzes the conversion of fructose to mannitol, an acyclic 6-carbon sugar. MDH is a tetrameric member of the SDR family. This subgroup also includes various other tetrameric SDRs, including Pichia stipitis D-arabinitol dehydrogenase (aka polyol dehydrogenase), Candida albicans Sou1p, a sorbose reductase, and Candida parapsilosis (S)-specific carbonyl reductase (SCR, aka S-specific alcohol dehydrogenase) which catalyzes the enantioselective reduction of 2-hydroxyacetophenone into (S)-1-phenyl-1,2-ethanediol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser).
Statistics
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PSSM-Id: 187610
Aligned: 14 rows
Threshold Bit Score: 347.011
Created: 13-Dec-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
1H5Q_L      7 GFTISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSaadavevTEKVGKEFGvKTKAYQCDVSNtDIVTKTIQQI 86  common mushroom
3CTM_A     27 LDLFSLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNShpa-dekAEHLQKTYGvHSKAYKCNISDpKSVEETISQQ 105 Candida parapsilosis
1H5Q_A      7 GFTISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSaadavevTEKVGKEFGvKTKAYQCDVSNtDIVTKTIQQI 86  common mushroom
BAE65794   12 LKAFDLSGKVAAVTGGARGIGLEVSIALAEAGADVALIYNSsktaetlATEVATKHNvKAAAYQADVANqEDIEKAIKQI 91  Aspergillus oryzae
P87219     28 LDLFSLKGKVASVTGSSGGIGWAVAEAFAQAGADVAIWYNSkpa-dakAEYLTEKYGvKAKAYKCNVTDpNDVSKVINEI 106 Candida albicans
CAA20782   14 LDLFSLKGKNCVVFGAAKGIGFSIATAFAQAGGNVIITYLTtdp-tekAKKLAEETGvQVHTLKIDISRsDTVEAGVEEI 92  fission yeast
EAA61993    1 MSKFSLKGRTALVTGGGRGCGLAFARGLAEAGADVAVFDIIdpr--peFHAIEKDYNvRTAYYKVDVSSqDSLKDGFAQF 78  Aspergillus nidula...
O13908     14 LDLLSLKGKNAVVFGGARGIGHAICSVFAEAGANAFIVYNTtpg-ekaAKEIAQANGvKTYTCKCDVTIpKEVEHAFAEI 92  fission yeast
O00058      2 TFTIDLKDQCIIVTGGNRGIGLAMSQACADAGAAVGIIYNSakdaedrASEISKKYGvKCKAYQCDVGQqHKVKEVFKKI 81  Uromyces viciae-fabae
Q9Y6Z9      2 TSMFSLKGKTTLITGGSGGIGFSIAKAFAAAGSNVGLLYGRnkkaleyAAELRDKHGvQAKAYSCPIENrSAVIETTNQA 81  fission yeast
Feature 1                                            #                             #          
1H5Q_L     87 DADL-GPISGLIANAGVSVv--KPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLqk-qQKGSIVVTSSMSSQIINQss 162 common mushroom
3CTM_A    106 EKDF-GTIDVFVANAGVTWtqgPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKk--nGKGSLIITSSISGKIVNI-- 180 Candida parapsilosis
1H5Q_A     87 DADL-GPISGLIANAGVSVv--KPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLqk-qQKGSIVVTSSMSSQIINQss 162 common mushroom
BAE65794   92 AADF-GKLDIIVANSGICSn--VPAEDYTAEQWHNITKVNLDGAFYTAQAAARIFKe--qGHGNVIFTASVSATLVNV-- 164 Aspergillus oryzae
P87219    107 EKDF-GTIDIFVANAGVAWtdgPEIDVQGYDQWKKIVDCDLNGVYYCAHTVGQIFKk--nKSGSLIITSSMSGTIVNI-- 181 Candida albicans
CAA20782   93 QKIF-KEIHVVVANAGMPFr--RSVLDSPPHEFEKVMNINTNSVYRVAYYMGKIFKk--qGFGNLIATASMSATIVNA-- 165 fission yeast
EAA61993   79 QQDFdGKLDICVPCAGINRh--TCFLGFTYEEHHDLLSINVLGLYFTAQYAAKQMIangtHHGSIILVASMASYVAVR-- 154 Aspergillus nidula...
O13908     93 QKVF-DTIDIVVPNNGICTg--KSAIDMTYEEFANEINVNLLGVFNVAHNAGPIFQk--qGHGSLVATASMSGVVVNV-- 165 fission yeast
O00058     82 NEEL-GPVTGLIANAGVSVv--KEALQYNKDDFNKIFDVNVFGVFNCAQAMAQIWTdtgfQRGSVVIISSMSSQICNR-- 156 Uromyces viciae-fabae
Q9Y6Z9     82 VEELgGRLDVMIANAGIAIp-hLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKk--qGKGSLIFTASMSGHIANW-- 156 fission yeast
Feature 1              #   #                                                                  
1H5Q_L    163 lngSLTQVFYNSSKAACSNLVKGLAAEWAsAGIRVNALSPGYVNTDQTahmdkKIRDHQASNIPLnRFAQPEEMTGQAIL 242 common mushroom
3CTM_A    181 ---PQLQAPYNTAKAACTHLAKSLAIEWA-PFARVNTISPGYIDTDITdfaskDMKAKWWQLTPLgREGLTQELVGGYLY 256 Candida parapsilosis
1H5Q_A    163 lngSLTQVFYNSSKAACSNLVKGLAAEWAsAGIRVNALSPGYVNTDQTahmdkKIRDHQASNIPLnRFAQPEEMTGQAIL 242 common mushroom
BAE65794  165 ---PQKQAAYNASKAAVVQMAKCLSVEWV-DFCRVNCISPGFIATDILdihpkEWREKWFDMIPAkRMAEAYELKGAYVF 240 Aspergillus oryzae
P87219    182 ---PQLQAPYNAAKAACTHLAKSLSVEWAsFGARVNSISPGYILTDIAdfadpEMKKKWWQLTPLgREGLPQELVGAYLY 258 Candida albicans
CAA20782  166 ---PQHIAAYCASKAAVRQLCKALAVEWA-EFARINSVSPGYFATDMPg---yEFLKQWEPYVPFkRLGLTPELRGTYLY 238 fission yeast
EAA61993  155 ---DQNCSAYCGTKGAVRAMCPAIAKELTeYGIRVNSISPGYVNTEMTaa-fsHLVEGWKAETINkRIAEPEDIMGACNL 230 Aspergillus nidula...
O13908    166 ---PQQQCAYNTSKAGVIQLIKSLAVEWR-KFARVNCVSPGYTTSDMTg---gKFHKEWEPYTPFeRNGLAKEIASAYLY 238 fission yeast
O00058    157 ---PLTQCFYNSSKAAVSNLGKCLAAEWAeKSIRVNMLSPGYVKTDQTshmdqKLRDFQADGVPLkRFAEPEEMAGQAIL 233 Uromyces viciae-fabae
Q9Y6Z9    157 ---PQQWASYHATKAAVKHLARALAVEWA-PFARVNSVSPGYIDTDLTlyadeNLRKKWKEYTPQaRIGLPDELPGAYLY 232 fission yeast
Feature 1                           
1H5Q_L    243 LLSDHATYMTGGEYFIDGGQLI 264 common mushroom
3CTM_A    257 LASNASTFTTGSDVVIDGGYTC 278 Candida parapsilosis
1H5Q_A    243 LLSDHATYMTGGEYFIDGGQLI 264 common mushroom
BAE65794  241 CASDASSYMTGANIVIDGGYTL 262 Aspergillus oryzae
P87219    259 LASNASTYTTGSNIAVDGGYTC 280 Candida albicans
CAA20782  239 LASNASSFVTGLDLIVDGGYTC 260 fission yeast
EAA61993  231 KSIPAVLSHYAMTPWANSSYGC 252 Aspergillus nidulans FGSC A4
O13908    239 LASDAASYASGTNLIVDGGYTS 260 fission yeast
O00058    234 LLSPKASYMTGGEYFVDGGNLV 255 Uromyces viciae-fabae
Q9Y6Z9    233 LASDASSYCTGSDIIVDGGYCS 254 fission yeast

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