1S6Y,1U8X,1OBB,1UP7


Conserved Protein Domain Family
GH4_glycoside_hydrolases

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cd05197: GH4_glycoside_hydrolases 
Click on image for an interactive view with Cn3D
Glycoside Hydrases Family 4
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Statistics
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PSSM-Id: 133425
Aligned: 4 rows
Threshold Bit Score: 587.953
Created: 6-Dec-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:NAD binding site [chemical binding site]
Evidence:
  • Structure:1OBB_B; Thermotoga maritima alpha-glucosidase contacts to NAD at 3.5A
  • Structure:1U8X_X: Bacillus subtilis GlvA contacts to NAD at 3.5A
  • Structure:1UP7_A: Thermotoga maritima 6-Phospho-Beta Glucosidase binds NAD, contacts determined at 3.5A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             ##                          ##     #                                    
1S6Y_A      8 LKIATIGGGSS-YTPELVEGLIKRyhELPVGELWLVDIPegKEKLEIVGALAKRXVEkagvpiEIHLTLDRRRALDGADF 86  Geobacillus stearo...
1U8X_X     29 FSIVIAGGGST-FTPGIVLXLLDHleEFPIRKLKLYDND--KERQDRIAGACDVFIRekapdiEFAATTDPEEAFTDVDF 105 Bacillus subtilis
1OBB_B      4 VKIGIIGAGSAvFSLRLVSDLCKTp-GLSGSTVTLMDID--EERLDAILTIAKKYVEevgadlKFEKTMNLDDVIIDADF 80  Thermotoga maritima
1UP7_A      3 MRIAVIGGGSS-YTPELVKGLLDIseDVRIDEVIFYDID--EEKQKIVVDFVKRLVKdr---fKVLISDTFEGAVVDAKY 76  Thermotoga maritima
Feature 1        ###  ##                            #           #                   # #       
1S6Y_A     87 VTTQFRVGGLEARAKDERIPLKYGVIg------QETNGPGGLFKGLRTIpVILDIIRDXEELCpDAWLINFTNPAGXVTE 160 Geobacillus stearo...
1U8X_X    106 VXAHIRVGKYAXRALDEQIPLKYGVVg------QETCGPGGIAYGXRSIgGVLEILDYXEKYSpDAWXLNYSNPAAIVAE 179 Bacillus subtilis
1OBB_B     81 VINTAMVGGHTYLEKVRQIGEKYGYYrgidaqeFNMVSDYYTFSNYNQLkYFVDIARKIEKLSpKAWYLQAANPIFEGTT 160 Thermotoga maritima
1UP7_A     77 VIFQFRPGGLKGRENDEGIPLKYGLIg------QETTGVGGFSAALRAFpIVEEYVDTVRKTS-NATIVNFTNPSGHITE 149 Thermotoga maritima
Feature 1                  #                                                                  
1S6Y_A    161 AVLRYtkqEKVVGLCNVPIGXRXGVAKLLgv-daDRVHIDFAGLNHXVFGLHVYLD-GVEVTEKVIDLVAHPDrsgvtxk 238 Geobacillus stearo...
1U8X_X    180 ATRRLrpnSKILNICDXPVGIEDRXAQILglssrKEXKVRYYGLNHFGWWTSIQDQeGNDLXPKLKEHVSQYGyipktea 259 Bacillus subtilis
1OBB_B    161 LVTRTv-pIKAVGFXHGHYGVMEIVEKLGle--eEKVDWQVAGVNHGIWLNRFRYN-GGNAYPLLDKWIEEKSkdwkpen 236 Thermotoga maritima
1UP7_A    150 FVRNYleyEKFIGLCNVPINFIREIAEMFsa-rlEDVFLKYYGLNHLSFIEKVFVK-GEDVTEKVFENLKLKLsnipded 227 Thermotoga maritima
Feature 1                                                                                     
1S6Y_A    239 nivd-------lgwepdflkgLKVLPCPYHRYYFqtdkxlaee------------leaaktkgTRAEVVQQL-EKELFEL 298 Geobacillus stearo...
1U8X_X    260 eaveaswndtfakardvqaadPDTLPNTYLQYYLfpddxvk----------------ksnpnhTRANEVXEGrEAFIFSQ 323 Bacillus subtilis
1OBB_B    237 pfndq-----lspaaidmyrfYGVMPIGDTVRNSswryhrdletkkkwygepwggadseigwkWYQDTLGKV-TEITKKV 310 Thermotoga maritima
1UP7_A    228 f-------------ptwfydsVRLIVNPYLRYYLmekkmfk----------------kistheLRAREVMKI-EKELFEK 277 Thermotoga maritima
Feature 1                                                                                     
1S6Y_A    299 YKdpnlaikp---------------------pqlekrggAYYSDAACSLISSIYNDKRDIQPVNTRNNGAIASISAESAV 357 Geobacillus stearo...
1U8X_X    324 CDxitreqss----------------------enseikiDDHASYIVDLARAIAYNTGERXLLIVENNGAIANFDPTAXV 381 Bacillus subtilis
1OBB_B    311 AKfikenpsvrlsdlgsvlgkdlsekqfvlevekildpeRKSGEQHIPFIDALLNDNKARFVVNIPNKGIIHGIDDDVVV 390 Thermotoga maritima
1UP7_A    278 YRtaveipe-----------------------eltkrggSMYSTAAAHLIRDLETDEGKIHIVNTRNNGSIENLPDDYVL 334 Thermotoga maritima
Feature 1                                                                                  
1S6Y_A    358 EVNCVITKDGPKPIA-VGDl-PVAVRGLVQQIKSFERVAAEAAVtGDYQTALVAXTINPlVPSDTIAKQILDEXLEA 432 Geobacillus stearothe...
1U8X_X    382 EVPCIVGSNGPEPIT-VGTi-PQFQKGLXEQQVSVEKLTVEAWAeKSFQKLWQALILSKtVPNARVARLILEDLVEA 456 Bacillus subtilis
1OBB_B    391 EVPALVDKNGIHPEKiEPPlpDRVVKYYLRPRIMRMEMALEAFLtGDIRIIKELLYRDPrTKSDEQVEKVIEEILAL 467 Thermotoga maritima
1UP7_A    335 EIPCYVRSGRVHTLS-QGKg-DHFALSFIHAVKMYERLTIEAYLkRSKKLALKALLSHPlGPDVEDAKDLLEEILEA 409 Thermotoga maritima

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