Conserved Protein Domain Family
PIKKc_SMG1

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cd05170: PIKKc_SMG1 
Catalytic domain of Suppressor of Morphogenetic effect on Genitalia-1
SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by genome mutations and by errors during transcription and splicing. SMG-1 phosphorylates Upf1, another central component of NMD, at the C-terminus upon recognition of PTCs. The phosphorylation/dephosphorylation cycle of Upf1 is essential for promoting NMD. In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases.
Statistics
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PSSM-Id: 270714
Aligned: 22 rows
Threshold Bit Score: 483.681
Created: 19-Mar-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:ATP binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                # ### #               # #  #                                     #    
Q8BKX6    2119 IHSVGGTITILPTKTKPKKLLFLGSDGksYPYLFKGLEDLHLDERIMQFLSIVNTMFAtinr---qetpRFHARHYSVTP 2195 house mouse
AAP44699  1956 ISSFCKEVTVLSTKTRPKKLVLQGSDGqkYTYLLKGREDLRLDSRIMQLLEAINSFFYsssd---trsrNMAIRFYSVTP 2032 Japanese rice
EFO20071   175 LERISKQTVILPTKTRPRKVVFHGSDGkdYPFLFKGQEDLHLDERIMQLLRICNLMLStket----dwpSYIAENYSVIP 250  Loa loa
Q61CW2    1743 IARVADNVTILPTKTRPKKLGFIGSDGkqLAFLFKGREDLHLDERVMQFLRLCNVMLQsekgk-srqiaEYQAHHYAVIP 1821 Caenorhabditis b...
CCD82625  2502 ASYLGSRITVLPTKTRPKRLLLRAQNGrsYPYLLKGLEDLRLDDRIMRLFELTNLAAVelssnnfryleNTFARTYSVTP 2581 Schistosoma mansoni
EFJ17134  1492 VANFNDQITILATKTKPKKVSVTGSDGqvYNYLLKGREDLRLDARIMQLLRASNKMLRassa---trreGLAVKCYSVTP 1568 Selaginella moel...
EDQ73281  1967 VASFSSHVTVLSTKTKPKKLQIVGSDGnvYPYLLKGREDLRLDARIMQLLQAVNSMLLsrce---trrrVLVVRHYSVTP 2043 Physcomitrella p...
EDQ86820  2518 IQSFQPEVHVLPSKTKPKRLTLLGTDGhrYKFLFKGMEDLHLDERMMQILDTINALLAprar---harsHVRARNYNVTP 2594 Monosiga brevico...
EEY59985  1797 IHRVDASVTVLRTKTKPKSLKLIGSDGktYKYLLKAREDLRLDERIMQYLRVTNQFLQadda---aaarDLSAQSYSVIP 1873 Phytophthora inf...
EGC31088  1790 IQMIQPTIYLLPTKTKPKKISILGSDGnlYHYLLKGREDLHLDERIMQLLNIVDQLLMndkk---ptlkLLRTRNYSVIP 1866 Dictyostelium pu...
Feature 1             ####    #                                                                
Q8BKX6    2196 LGTRSGLIQWVDGATPLFGLYKRWq--------------QREAALQAQKAQDSYQtpqnp---sivpRPSELYYSKIGPA 2258 house mouse
AAP44699  2033 ISGRAGLIQWVENVSSIYNVYKTWq--------------KRSQLAQAQLSSVNTVnnsihksvppvpRPSDMFYGKIIPA 2098 Japanese rice
EFO20071   251 LGSRSGLIEWVEGATPIFQVYRKW---------------QLRQVTENIANQKTNEv----------eRPSALFFKKLKAA 305  Loa loa
Q61CW2    1822 LGPRSGLIKWVEGATPIFHIYRKW---------------QMKEKALKQATKKNGEtvp------eieKPTNMYHNMIRQA 1880 Caenorhabditis b...
CCD82625  2582 LGVRSGLLQMVQGAVPLFSLYKKW---------------QLRNYKLSSSNGYVSStsv-------ipRPGELFHARLKEF 2639 Schistosoma mansoni
EFJ17134  1569 ISGRAGLIQWVDNVTSLYSVYKAWq--------------LRQQAAQLSSNAVSGAppp-------lpRPSDMFYGKIIPA 1627 Selaginella moel...
EDQ73281  2044 INGRAGLIQWIEDLTSMYSVYKAW---------------QERSVAASGTNLNHGVss--------vpRPSDLFYGKIIPA 2100 Physcomitrella p...
EDQ86820  2595 LGPRSGLIQWVDHTVPMFQLYRTWqqa---------eyeAQRAEHQAKKSKRAPSap---------lRPQHQFQVELRQV 2656 Monosiga brevico...
EEY59985  1874 LSRNAGLIQMVPDVVPLFQVYTARn-------------dASGRTPQDPVAASSAQqp---------pPPTAQFYAKLKQH 1931 Phytophthora inf...
EGC31088  1867 LSQSSGLIQWVEGAVPLFSLYKNWyrndqlfkqqqqqpqQSGQNQQAQTSASTQQqrq------ilvRPVDIFYSKINPL 1940 Dictyostelium pu...
Feature 1                                                                                      
Q8BKX6    2259 LKTVGlsl--dvsRRDWPLHVMKAVLeeLMEATPPNLLAKELWSSCttpDEWWRVTQSYARSTAVMSMVGYIIGLGDRHL 2336 house mouse
AAP44699  2099 LKEKGikr--visRRDWPLDVKRKVLleLMKETPKQILWQEMWCASegfRNFNSKVKRFSSSVAAMSMIGHVLGLGDRHL 2176 Japanese rice
EFO20071   306 FQANKipkesitdRQKWPYHILKGVVedLIEETPRDLLSRELWLRAgssDTWFRVTERFARSTAVMSVLGSILGLGDRHL 385  Loa loa
Q61CW2    1881 FTAHNidaiiasdRSKWPAQILEEVFdgLCSKTPTDLISREIWMRAndsTAWWAVTKRYARSLAVMSMVGSVLGLGDRHL 1960 Caenorhabditis b...
CCD82625  2640 LHAAGhhyq-sqsRSNWPLEILREVLisLEAETPADLLTRELWASNpscASWWRVTRTFAKSAGLLSSLGYLVGLGDRHL 2718 Schistosoma mansoni
EFJ17134  1628 LKEKGlrk--visRRDWPQDVKRKVLldLMKETPRQLLYRELWCASdglKGLNKKIKRFSGSVAVMSVIGHVLGLGDRHL 1705 Selaginella moel...
EDQ73281  2101 LKEKGlrk--visRRDWPQDVKRNVLleLVKETPRQLLHNELWCASeglSSFRAKLDRFSGSVAVISIVGYILGLGDRHL 2178 Physcomitrella p...
EDQ86820  2657 LDRMNvrk--gtpREQWPLEALRRAFk-TLSKTSNQILSRELHVMSpssAAWLEVLGNYTSSLAVNSMIGYVVGLGDRHL 2733 Monosiga brevico...
EEY59985  1932 GITNVap----nnRSLWPPNVLRQVYqeLVAQRPRNVLQQKILLRSedlRESWIKSTRLSKSLAVMSVLGYIVGLGDRHL 2007 Phytophthora inf...
EGC31088  1941 LENNNfni---lnRSEWPKEILLQVFneLVQETPKWILQRELWFSSsssSELFLKTQSYSRSLALMSVIGYIIGLGDRHL 2017 Dictyostelium pu...
Feature 1       # #          ##                                                                
Q8BKX6    2337 DNVLIDmtTGEVVHIDYNVCFEKGKSLRVPEKVPFRMTQNIETALGvt----gVEGVFRLSCEQVLHIMRRG--RETLLT 2410 house mouse
AAP44699  2177 DNILMDfsSGDVVHIDYNICFDKGKRLKIPEIVPFRLTQTIESALGlt----gVEGVFRVTCEEVMAVLLRN--KDIILM 2250 Japanese rice
EFO20071   386 DNVLVNfeFGHVVHIDYNVCFDKGRNLRVPEMVPFRLTGNIIRALGpt----dVEGTFRLSCENVLGKLRAG--REILLT 459  Loa loa
Q61CW2    1961 DNLLVDlkYGHVVHIDYNICFDKGKILRIPETVPFRLSRNMRHALGps----dMYGTFRESCVHVLSTLRSG--HQVLTM 2034 Caenorhabditis b...
CCD82625  2719 DNLLIDlsTGHIVHIDYNVCFDKGKSLRVAERVPFRLTRILRHALGpacqdtlVRGTFRFTAESGLQAARLI--VDPLLI 2796 Schistosoma mansoni
EFJ17134  1706 DNILIDfsSGDVVHIDYNICFEKGRRLKVPEIVPFRLTQTIQNALGpt----gVEGFFRASCEAVLSVLQKN--KEVILM 1779 Selaginella moel...
EDQ73281  2179 DNILVDfrSGDVVHIDYNVCFDKGLRLKIPEIVPFRLTHTIQAALGlt----gVEGVFRKNCEAVLRVLQSN--KDVLLM 2252 Physcomitrella p...
EDQ86820  2734 DNILLDahTGELVHIDYNVAFEKGTKLRVPEQVPFRLSANFVEALGia----gLHGPFRQHAEFTLRELKRS--KEVLLT 2807 Monosiga brevico...
EEY59985  2008 DNILLCvnSGDIVHIDHNVCFDKGRRLKVPEIVPFRLTPMLQDALGft----gVEGRFRMAFETTLRIVRSDnvREALLT 2083 Phytophthora inf...
EGC31088  2018 DNILIDlkTGEIVHIDYNICFEKGLELKIPEKVPFRMTQIFEYALGlt----gIHGTFRETSIQILNLLRKN--KDILLN 2091 Dictyostelium pu...
Feature 1                     
Q8BKX6    2411 LLEAFVYDPLVDWTA 2425 house mouse
AAP44699  2251 LLEVFLWDPLMEWTR 2265 Japanese rice
EFO20071   460 MLDAFVYDPLVDWAA 474  Loa loa
Q61CW2    2035 LLDAFVFDPLVDWTS 2049 Caenorhabditis briggsae
CCD82625  2797 QLKAFLIDPLVDWQQ 2811 Schistosoma mansoni
EFJ17134  1780 LLEAFVWDPLVEWMR 1794 Selaginella moellendorffii
EDQ73281  2253 LLQVFIWDPLVEWMR 2267 Physcomitrella patens subsp. patens
EDQ86820  2808 LLEAFVHDPLVDWAK 2822 Monosiga brevicollis MX1
EEY59985  2084 LFEAFVYGPLVDWIA 2098 Phytophthora infestans T30-4
EGC31088  2092 LLETFIYDPLFDWKH 2106 Dictyostelium purpureum

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