1ZP9,3RE4


Conserved Protein Domain Family
RIO1_like

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cd05145: RIO1_like 
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Catalytic domain of the atypical protein serine kinases, RIO1 and RIO3 kinases and similar proteins
RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. Both RIO1 and RIO3 are associated with precursors of 40S ribosomal subunits, just like RIO2. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and chromosome maintenance. Although depletion of either RIO1 and RIO2 results in similar effects, the two kinases are not fully interchangeable. The specific function of RIO3 is unknown. RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K).
Statistics
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PSSM-Id: 270696
Aligned: 39 rows
Threshold Bit Score: 216.264
Created: 26-Sep-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ATP binding
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure:1ZP9: Archaeoglobus fulgidus RIO1 serine kinase binds ATP and Mn2+, defined at 4A contacts.
  • Structure:3RE4: Archaeoglobus fulgidus RIO1 kinase binds Toyocamycin; contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #    ## #                                 # #                               
1ZP9_A     51 XGGVISTGKEANVFYADgvfd-------------------gkpVAXAVKIYRIe-tSEFDKXDEYLYGDERFdxrr---- 106 Archaeoglobus fulg...
YP_023030  55 FDFPISSGKESVVFRVLsn-----------------------rRPLVIKIYKMs-tLKFSNTSDYILGDYRFerek---- 106 Picrophilus torrid...
NP_560762  40 VLGPIGQGKEAKIILARga----------------------dgRYAVLKIFYPv-pVRFKRRSPYILGDPRFrnlk---- 92  Pyrobaculum aeroph...
YP_285082  19 VIGQLMSGKEATVYIVRcg-----------------------eHIRCAKVYKDakqRSFRKATSYQEGRKVKnsrqaram 75  Dechloromonas arom...
NP_745056  19 VLRPLMSGKEAAVYVVRcg-----------------------sEVRCAKVYKEankRSFRQAAEYQEGRKVRnsrqaram 75  Pseudomonas putida...
NP_635769  19 VLRPLKSGKEASVYVVSag-----------------------eDILCAKVYKDmaqRSFQARVQYQEGRKVRgsrqaram 75  Xanthomonas campes...
YP_465402  17 VGARLKTGKEAEVWLVQag-----------------------gEVVAAKVYKArqtRTFRNDAAYREGRRVRdsrtqram 73  Anaeromyxobacter d...
NP_393875  42 LDFPISSGKESVVFRAVsg-----------------------kKFVAVKIFKMs-tLKFMSIRKYIEGDQRFskir---- 93  Thermoplasma acido...
NP_597450  65 LQGSLCTGKESNVYLGEastslcskfiknrysvteepgregqiVPVVVKIFKTs-iMSFRDRERYIRSEKRFqrfc---- 139 Encephalitozoon cu...
EAY21164  102 IEGCISTGKEGNIYIGHrgesa----------------petwpEKFAIKIFKTc-iLKFKDRARYVTGEQRFqhhsk--- 161 Trichomonas vagina...
Feature 1                                      #           ####         #                     
1ZP9_A    107 -----ispKEKVFIWTEKEFRNLERAKEAGvSVPQPYTYXkNVLLXEFIGed-elPAPTLVELGrelkelDVEGIFNDVV 180 Archaeoglobus fulg...
YP_023030 107 -----lnrVNIVYIWARKEYTNLSEMMSAGvSVPRPLGFYkNVLLMSYIGtk-ksPAPQLRYVDn----aDFNDIFDAVL 176 Picrophilus torrid...
NP_560762  93 ----isdqLHLVEVWCRKEFGNLSRAYEAGvRVPRPLGFYrNVLAMEFIGvd-rnPAPLLAEVGlen-ieDPYGLFYDIL 166 Pyrobaculum aeroph...
YP_285082  76 ekgsrygrQMQEEVWQNAEVDALYRLAAAGvRVPQPYICFdGVLLMDLVVdadggAAPRLNDVAls--eaVALEFHAMLV 153 Dechloromonas arom...
NP_745056  76 akgskygrKEAEDAWQNAEVAALFRLAAAGvRVPKPYDFQdGVLLMELVTdadgdAAPRLNDVHle--aeDARAFHAFVI 153 Pseudomonas putida...
NP_635769  76 gkatkfgrKEAETAWKNTEADALYQLVDAGvHVPKPRGYFhGVLLMDLVTddaghSAPRLGEVEle--peQARLFHTSLV 153 Xanthomonas campes...
YP_465402  74 drgsrfgqAAAEEAWKAREADALHALHAAGvRVPRPVLFYeGVLLMELVVgpdghPAPRLVDAHvp--reRAAALYADLR 151 Anaeromyxobacter d...
NP_393875  94 -----idrNDIVPVWVRKEYTNLMALENAHvPAPKPIGFFkNILVMSYIGtk-sgPAPQLKDVE------IDEGIYDQVI 161 Thermoplasma acido...
NP_597450 140 ----tsnsRKLIKVWAEKEVRNLKRLNNAGiPSPEPIYLKnNILVMTQIGrc-seVAPRLRDASi----kDLEGCYQQCV 210 Encephalitozoon cu...
EAY21164  162 ----sknsRKAVVLWSEKEFRNLSRLHKNGvLCPEPLLVKhNIIFMELILnk-nsPAPTLRLANla--tkQFQDLYIDLA 234 Trichomonas vagina...
Feature 1                         # #        ##                               
1ZP9_A    181 ENVKRLYqeAELVHADLSEYNIXYi-DKVYFIDXGQAVTLRHP-XAESYLERDVRNIIRFFSKY 242 Archaeoglobus fulgidus
YP_023030 177 DNMKKMYrnAGLVHADLSDYNILYyrRKIYIIDTGQSVSIKHP-MAHDFLKRDVNNICSFFSRK 239 Picrophilus torridus DSM 9790
NP_560762 167 KNLEKTYvlAGLVHGDLSPFNILYdgQNPWIIDWGSAVRRGHP-KEFEYLRRDVERVLEFFGYP 229 Pyrobaculum aerophilum str. IM2
YP_285082 154 NQVVRMLc-AGIIHGDLSEYNILVdeNGPVIIDLPQAIDAAANsTAAEMLERDVNNLRSYFSTF 216 Dechloromonas aromatica RCB
NP_745056 154 RQVVLMLc-AGMVHGDLSEFNVLLgpDGPVIIDLPQAVDAAANnHAFSMLQRDVDNMAHYFGRF 216 Pseudomonas putida KT2440
NP_635769 154 GDVVKMLc-LGLVHGDLSEYNVLVspDGPVVIDFPQVVSAAGNnAARDMLLRDVHNLRDCLGRF 216 Xanthomonas campestris pv. campest...
YP_465402 152 AQAVRMLc-CDLIHGDLSPYNVLLghDGPVVIDFPQVVGAAHNgQAEAFFRRDLENLRRFFAAL 214 Anaeromyxobacter dehalogenans 2CP-C
NP_393875 162 DGMRRMYa-NRIVHADLSEYNMLFh-RKVYFIDLAQAVDMDHP-MAAEFLERDIVNVSNFFQKH 222 Thermoplasma acidophilum DSM 1728
NP_597450 211 KIIRDMYkkAGLVHADLSEFNLLYfeGVVYVIDVGQSVEIDHD-NAQRFLIMDINNINSFFSRK 273 Encephalitozoon cuniculi GB-M1
EAY21164  235 KTIRFMYhtCELVHADLSEYNLLVkgTSLYIIDVGQAVEIDNP-NANQFLRNDICVITSFFKSR 297 Trichomonas vaginalis G3

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