1ZP9,1TQP,3RE4


Conserved Protein Domain Family
RIO

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cd05119: RIO 
Click on image for an interactive view with Cn3D
Catalytic domain of the atypical protein serine kinases, RIO kinases
RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They function as non-ribosomal factors necessary for late 18S rRNA processing. RIO1 is also required for proper cell cycle progression and chromosome maintenance. The biological substrates for RIO kinases are still unknown. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K).
Statistics
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PSSM-Id: 270689
Aligned: 3 rows
Threshold Bit Score: 252.637
Created: 26-Sep-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ATP binding
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure:1ZP9: Archaeoglobus fulgidus RIO1 serine kinase binds ATP and Mn2+, defined at 4A contacts.
  • Structure:1TQP: Archaeoglobus fulgidus RIO2 serine kinase binds ATP; defined at 4A contacts.
  • Structure:3RE4: Archaeoglobus fulgidus RIO1 kinase binds Toyocamycin; contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #    ## #              # #                                                  
1ZP9_A     51 XGGVISTGKEANVFYADgvfdgkpVAXAVKIYRietsefdkxdeylygderfdxrrispkEKVFIWTEKEFRNLERAKEa 130 Archaeoglobus fulg...
1TQP_A     94 IGKLXGEGKESAVFNCYse---kfGECVVKFHKvghtsfkkvke------krdygdlhfsVLAIRSARNEFRALQKLQGl 164 Archaeoglobus fulg...
3RE4_A     51 MGGVISTGKEANVFYADgvfdgkpVAMAVKIYRietsefdkmdeylygderfdmrrispkEKVFIWTEKEFRNLERAKEa 130 Archaeoglobus fulg...
Feature 1         #           ####        #                                         # #       
1ZP9_A    131 gvSVPQPYTYXkNVLLXEFIGedelpaPTLVELGrelkelDVEGIFNDVVENVKRLYqeAELVHADLSEYNIXYi-DKVY 209 Archaeoglobus fulg...
1TQP_A    165 --AVPKVYAWEgNAVLXELIDa-----KELYRVRv----eNPDEVLDXILEEVAKFYh-RGIVHGDLSQYNVLVseEGIW 232 Archaeoglobus fulg...
3RE4_A    131 gvSVPQPYTYMkNVLLMEFIGedelpaPTLVELGrelkelDVEGIFNDVVENVKRLYqeAELVHADLSEYNIMYi-DKVY 209 Archaeoglobus fulg...
Feature 1      ##                              
1ZP9_A    210 FIDXGQAVtlrhpxaESYLERDVRNIIRFFSKY 242 Archaeoglobus fulgidus
1TQP_A    233 IIDFPQSVevgeegwREILERDVRNIITYFSRT 265 Archaeoglobus fulgidus DSM 4304
3RE4_A    210 FIDMGQAVtlrhpmaESYLERDVRNIIRFFSKY 242 Archaeoglobus fulgidus

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