1Y6B,3HNG,3VHE


Conserved Protein Domain Family
PTKc_VEGFR

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cd05054: PTKc_VEGFR 
Click on image for an interactive view with Cn3D
Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors
PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. VEGFR subfamily members are receptor PTKss (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. There are five VEGF ligands in mammals, which bind, in an overlapping pattern to the three VEGFRs, which can form homo or heterodimers. VEGFRs regulate the cardiovascular system. They are critical for vascular development during embryogenesis and blood vessel formation in adults. They induce cellular functions common to other growth factor receptors such as cell migration, survival, and proliferation. The VEGFR subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.
Statistics
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PSSM-Id: 270647
Aligned: 7 rows
Threshold Bit Score: 572.897
Created: 17-Jul-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 22 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure:3HNG; Human VEGFR1 binds benzamide inhibitor; contacts at 4A.
  • Structure:1Y6B; Human VEGFR2 binds an aryl-oxazole inhibitor; defined at 4A contacts.
  • Structure:3VHE: Human VEGFR2 binds a Pyrrolopyrimidine Inhibitor; contacts at 4A.
  • Comment:Also based on the structures of human VEGFR2 bound to other inhibitors.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                       ###     #                 ###                #                    
1Y6B_A         21 KWEFPRDRLKLgKPLGRGAFGQVIEADAFGIDktaTCRTVAVKMLKEGathsEHRALMSELKILIHIGHHLNVVNLLGAC 100  human
3HNG_A         21 KWEFARERLKLgKSLGRGAFGKVVQASAFGIKkspTCRTVAVKMLKEGatasEYKALMTELKILTHIGHHLNVVNLLGAC 100  human
3VHE_A         16 KWEFPRDRLKLgKPLGRGAFGQVIEADAFGIDktaTCRTVAVKMLKEGathsEHRALMSELKILIHIGHHLNVVNLLGAC 95   human
BAE06749      306 KWEFPRDRLRFgKTLGRGAFGKVIQATAFDLEkssSCKTVAVKMLKVGsrsnEYRALMTELRILIHLGPHLNIVNLLGAC 385  Ciona intesti...
NP_001014829  809 KWEFPRDRLKLeKPLGRGAFGRVMQASAVGTGnsaSCTTVAVKMLKDGatpsEHKALMTELKILNHIGHHINVVNLLGAC 888  zebrafish
P79701        850 KWEFPRDRLRLgKVLGHGAFGKVVEASAFGINksnSCETVAAKMLKEGatasEQKALMSELKILIHIGNHLNVVNLLGAC 929  common quail
CAL91935     1248 KWEFPRERLKIgPVIGRGAFGRVMRASAFGIDkvdTCTTVAVKMLKEDasdtERKALLTELKMLIHIGPHLNIVNLLGAC 1327 common urchin
Feature 1                 # ##### ##                                                              
1Y6B_A        101 TkpGGPLMVIVEFCKFGNLSTYLRSKRneFVPYKTKGARfrqgkdyvgaipvdlkrrld--------------------- 159  human
3HNG_A        101 TkqGGPLMVIVEYCKYGNLSNYLKSKRdlFFLNKDAALHmepkkekmepgleqgkkprld-------------------- 160  human
3VHE_A         96 TkpGGPLMVIVEFCKFGNLSTYLRSKRneFVPYKTKGARfrqgkdyvgaipvdlkrrld--------------------- 154  human
BAE06749      386 TtkEGPLMVIVEYCRHGNLSNYLRGLRhcYTGGRNEDTSkqeikkqrlmsddsaddgafsgtdetdrsswitdkrgsras 465  Ciona intesti...
NP_001014829  889 TksGGPLMVIVEYCQFGNLSAYLKSKRevFLLNRVNKEEegvmkegckgrltsvs------------------------- 943  zebrafish
P79701        930 TkpNGPLMVIVEFCKYGNLSNYLRTKRegFSPYREKSPRlriqvqsiveavradrrsr---------------------- 987  common quail
CAL91935     1328 T--RKDLYVISEFCPFGNLSDYLKTKRknYVAEPDLLAIapigpvdrssrgss--------------------------- 1378 common urchin
Feature 1                                                                                #      # 
1Y6B_A        160 -------------sitssqssassgfveekslsDVEEEEAP-EDLYKd---FLTLEHLICYSFQVAKGMEFLASRKCIHR 222  human
3HNG_A        161 -------------svtssesfassgfqedkslsDVEEEEDS-DGFYKe---PITMEDLISYSFQVARGMEFLSSRKCIHR 223  human
3VHE_A        155 -------------sitssqssassgfveekslsDVEEEEAP-EDLYKd---FLTLEHLICYSFQVAKGMEFLASRKCIHR 217  human
BAE06749      466 ylsgtgsltshegdirshtrlssgcedsrmnleKHHEANDDgDEKGKeqkdQLTLTDLLSYSLQVARGMEFLASKKCIHR 545  Ciona intesti...
NP_001014829  944 -----------------srqsnassgfseergeISEEDSYClSELSD----PLLLEDLISYSFQVARGMEFLASRKCIHR 1002 zebrafish
P79701        988 ---------------sgtsdsaifnrflmhksqTVQPIQEV-DDLWQs---PLTMEDLICYSFQVARGMEFLASRKCIHR 1048 common quail
CAL91935     1379 -------------------rgggdgfmgarggsSLEVGDDDvFEYMEke-ePLTLKDLICYSFQVARGMEFLASKKCIHR 1438 common urchin
Feature 1                #         ###                                                            
1Y6B_A        223 DLAARNILLSEkNVVKICDFGLARDIYKDPDYVRKG-DARLPLKWMAPETIFDrVYTIQSDVWSFGVLLWEIFSLGASPY 301  human
3HNG_A        224 DLAARNILLSEnNVVKICDFGLARDIYKNPDYVRKG-DTRLPLKWMAPESIFDkIYSTKSDVWSYGVLLWEIFSLGGSPY 302  human
3VHE_A        218 DLAARNILLSEkNVVKICDFGLARDIYKDPDYVRKG-DARLPLKWMAPETIFDrVYTIQSDVWSFGVLLWEIFSLGASPY 296  human
BAE06749      546 DLAARNVLLSDyQVVKICDFGLARDIYKDPDYVRSGgDARLPIKWMAPESIFDkVYSNKSDVWSFGVLLWEIFTLGGSPY 625  Ciona intesti...
NP_001014829 1003 DLAARNILLSNnNVVKICDFGLARDLYKDPDYVRNG-DARLPLKWMAPESIFDkVFTTQSDVWSYGVLLWEIFSLGASPY 1081 zebrafish
P79701       1049 DLAARNILLSEnNVVKICDFGLARDIYKDPDYVRKG-SARLPLKWMAPESIFDkVYTTQSDVWSFGVLLWEIFSLGASPY 1127 common quail
CAL91935     1439 DLAARNVLLAEnNIVKICDFGLARDIYSDPDYVTQT-GGRLPIKWMAPESIFDkVFTVYSDVWSFGVFMWECFALGGSPY 1517 common urchin
Feature 1                                                                  
1Y6B_A        302 PGvkiDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGePSQRPTFSELVEHLGNL 358  human
3HNG_A        303 PGvqmDEDFCSRLREGMRMRAPEYSTPEIYQIMLDCWHRdPKERPRFAELVEKLGDL 359  human
3VHE_A        297 PGvkiDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGePSQRPTFSELVEHLGNL 353  human
BAE06749      626 PGlqmDEDFCNKLRRGVRMGKPEHATDSVYSAMLGCWDNnPEDRPTFTKLCEEISDV 682  Ciona intestinalis
NP_001014829 1082 PGlnmDEEFCRRLKHGTRMCSPQYSTPEIYSIMCACWENnPEDRPSFTTLVEILGDL 1138 zebrafish
P79701       1128 PGvqiNEEFCQRFKDGTRMRAPEYTTAEIYRIMLSCWHGdPKERPTFSDLVEILGNL 1184 common quail
CAL91935     1518 PGvvvDEEFYNRLKSGYRMYTPDYAPHEIYHIMLDCWHTePKERPHFSELVHKLGDQ 1574 common urchin

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