Conserved Protein Domain Family
PTK_Ryk

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cd05043: PTK_Ryk 
Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)
Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain, which shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. The Ryk subfamily is part of a larger superfamily that includes other pseudokinases and the catalytic domains of active kinases including PTKs, protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.
Statistics
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PSSM-Id: 270639
Aligned: 9 rows
Threshold Bit Score: 476.558
Created: 14-Aug-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1710811      320 IAISRERITLk-DVLQEGTFGRIFHGILidekd------------pnkeKQAFVKTVKDQAseIQVTMMLTESCKLRGL- 385 human
Q27324       336 LTVQKCRVRLs-CLVQEGNFGRIYRGTYnd------------------cQEVLVKTVAQHAsqLQVNLLLQESMMLYEA- 395 fruit fly
AAH74417     315 IAISRERVTLk-DVLQEGTFGRIFHGILvdekd------------pskeRAFFVKTVKDQAseVQITMMLTESCKLRGL- 380 African clawed ...
XP_969941    259 LTVQRCRVRLs-NVIMEGTFARVYQGSYtnee--------------gvdEPVIVKTVTDHAsqIQISLLLQEGMSMYSL- 322 red flour beetle
NP_610835    373 ITSVQPGALSyeELVKEGTFGRIYAGKLge------------------sCEALVKTVIDGAslTQVACLLQDASLLIGV- 433 fruit fly
AAD24877     274 LYQDRDAFQSl-PLDMEGTFGEVRYAIWrqvddvlngdvddeedtfcnqEAVYTKTLKNNAspIQLDRFLSDALLFYNIt 352 nematode
NP_001077295 320 IAISRERVTLr-DVLHEGTFGRIFHGVLldekd------------pskeKQVFVKAVKDHAseVQVTMMLTESCKLRGL- 385 zebrafish
EAT38604      96 IAVSPDTIICq-QLAQEGTYGRIFYGVLhhpl--------------getRDVLIKTVVDGAslSQVAYLLSEGSTLCGV- 159 yellow fever mo...
AFJ51883     322 IAISRERITLk-DVLQEGTFGRIFHGILiedkd------------pskeKQVFVKTVKDQAseIQITMMLTESSKLRGL- 387 eastern diamond...
1710811      386 HHRNLLPITHVCIee--------gEKPMVILPYMN-WGNLKLFLRQCKlvean-npqaISQQDLVHMAIQIACGMSYLAR 455 human
Q27324       396 SHPNVLSVLGISIed--------yATPFVLYAATGsVRNLKSFLQDPSya------rsVTTIQTVLMGSQLAMAMEHLHN 461 fruit fly
AAH74417     381 HHRNLLPIGHVCIed--------gEKPMVLLPYMN-WGNLKLFLRQCKlvean-npqaISQQDLVHMAIQIACGMSYLAR 450 African clawed ...
XP_969941    323 NHKNILSILRVSIed--------hTAPFLLYAYNN-YSNLKIFLQKCKlspeg-vshtLTTQEVVDMALQIIQAMQYLHK 392 red flour beetle
NP_610835    434 SHQHILAPLLANTel--------pGPPEIAYPHPS-KGNLKMYLQKSRess-----taLSTRQLVEFGLHITKGLAYLHS 499 fruit fly
AAD24877     353 PHQNLSQVACVASfgrfdrpetvtDFPLVCYRHQG-FGNLKKFLTICRhgdktkgaqtLRTHQLVSLATQVSSAVAHIHK 431 nematode
NP_001077295 386 HHRNLLPISHVCIed--------gEKPMVLLPYMN-WGNLKLFLRQCKlaean-npqaISQQDLVHMAIQISCGMSYLAR 455 zebrafish
EAT38604     160 SHPNILFPVAAVTel--------sGPPKVAYPLAA-KGNLKLYLQSCRdigiqssgisLSTRQLVEFGLQVARGISHLHS 230 yellow fever mo...
AFJ51883     388 HHRNLLPITHVCIee--------gEKPMVLLPYMN-WGNLKLFLRQCKlvean-npqaISQQDLVHMAIQIACGMSYLAR 457 eastern diamond...
1710811      456 REVIHKDLAARNCVIDDt---LQVKITDNALSRDLFPMDYHCLGDNENRPVRWMALESLVNNEFSSASDVWAFGVTLWEL 532 human
Q27324       462 HGVIHKDIAARNCVIDDq---LRVKLTDSALSRDLFPGDYNSLGDGEYRPIKWLSLEALQKSHYNEGSDVWSFGVLMWEM 538 fruit fly
AAH74417     451 REVIHKDLAARNCVIDEs---LQVKITDNALSRDLFPMDYHCLGDNENRPVRWMSLESLVNKEFSSAGDVWAFGVTLWEL 527 African clawed ...
XP_969941    393 KNLLHKDLATRNCIVDDk---LNVQVADNALSRDLFPSDYHCLGDNENRPIKWMAIESLVHKTFSFSSDVWSFGVLLWEL 469 red flour beetle
NP_610835    500 LGIVHKDIATRNCYLDEe---SYVKICDSALSRDLFPDDYDCLGDNENRPLKWLSLESLQKRVYATQGDVWALGVTYWEL 576 fruit fly
AAD24877     432 YRIVHNDIAARNCLIAEvngrLQVQLCDSALSRDLFPADYHCLGDNENRPLKWMSPEAIANELYSSAADVWSLGVLLWEL 511 nematode
NP_001077295 456 REVIHKDLAARNCVIDNs---MQVKITDNALARDLFPMDYHCLGDNENRPVRWMALESLLNNDFSSASDVWAFGVTLWEL 532 zebrafish
EAT38604     231 LGVLHKDIATRNCVLDSe---QNVRVCDNALSRDVFPNDYHCLGDNENRPIKWMALETLEKKFYTASSDIWSLGVLLWEL 307 yellow fever mo...
AFJ51883     458 REVIHKDLAARNCVIDDa---LQVKITDNALSRDLFPMDYHCLGDNENRPVRWMALESLVNNEFSGASDVWSFGVTLWEL 534 eastern diamond...
1710811      533 MTLGQTPYVDIDPFEMAAYLKDGYRIAQPINCPDELFAVMACCWALdPEERPKFQQLVQCLTEFHAAL 600 human
Q27324       539 CTLGKLPYAEIDPYEMEHYLKDGYRLAQPFNCPDELFTIMAYCWASmPAERPSFSQLQICLSEFHTQI 606 fruit fly
AAH74417     528 MTLGQTPYVDIDPFEMAAYLKDGYRIAQPINCPDELFAVMACCWALdPEERPKFQQLVQCLTEFHSAL 595 African clawed frog
XP_969941    470 TTLAQQPYVEIDPFEIVAYLKDGYRLAQPINCPDELFAVMAYCWAMsAEERPTFTQLHICLQDFYTQL 537 red flour beetle
NP_610835    577 VTLAQMPHEEVDIFELTNYLAAGFRLEQPVNCPDEFFTVMNCCWHCeAKQRPTPSQLLSYLQDFHADL 644 fruit fly
AAD24877     512 MSLGGSPHAEIDPEEVYTMILKGKRLQQPNNCPDQLYEVMLCCWRVlSEDRPSSEQVVHGLRDFNIQL 579 nematode
NP_001077295 533 MTLGQTPYVDIDPFEMAAYLKDGYRIAQPINCPDELFAVMACCWALdPEERPKFQQLVQCLTEFHAAL 600 zebrafish
EAT38604     308 ATLAAMPFEEVDSFELAAYLRDGYRLAQPVNCPDEFYTVMSCCWLQdYKQRPSFPQLIAYLHDFHEDL 375 yellow fever mosquito
AFJ51883     535 MTLGQTPYVDIDPFEMAAYLKDGYRIAQPINCPDELFAVMACCWALdPEERPKFQQLVQCLTEFHAAL 602 eastern diamondback rattles...
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