1MOQ,1J5X,1JXA,2AML,2CB0,2DEC,2J6H,2POC


Conserved Protein Domain Family
SIS_GlmS_GlmD_2

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cd05009: SIS_GlmS_GlmD_2 
Click on image for an interactive view with Cn3D
SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) contains two SIS domains and catalyzes the deamination and isomerization of glucosamine-6-phosphate into fructose-6-phosphate with the release of ammonia; in presence of high ammonia concentration, GlmD can catalyze the reverse reaction.
Statistics
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PSSM-Id: 240142
Aligned: 167 rows
Threshold Bit Score: 86.9325
Created: 23-Mar-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active sitedimer interface
Conserved site includes 2 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1M0Q: E. coli glucosamine 6-phosphate synthase binds glucosamine-6-phosphate, contacts calculated at 3.5A
  • Structure:1JXA: E. coli glucosamine 6-phosphate synthase binds glucose 6-phosphate, contacts calculated at 3.5A
  • Structure:2J6H: E. coli glucosamine 6-phosphate synthase binds frutose-6-phosphoate, contacts calculated at 3.5A
  • Structure:2DEC: Pyrococcus horikoshii Ph0510 protein binds ethylene glycol and Na+, contacts calculated at 3.5A
  • Citation:PMID 9739095

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                          #  #                                          
1MOQ         212 KRIEALAEdfsdkhhALFLGRGd-QYPIALEGALKLKEI-SYIHAEAYAAGELKHGPLALIDaDMPVIVVApnn----el 285 Escherichia coli
NP_391141    180 DNAKQFAKahekesiIYTMASGa-NYGVAYSYSICILMEmQWIHSHAIHAGEYFHGPFEIIDeSVPFIILLgldetrple 258 Bacillus subtil...
NP_459564    180 EDAQRFAAewkdekvVYMMGSGpsFGAAHQESICILLEM-QWINSASIHSGEYFHGPFEITEpGTPFILLQssgrtrpld 258 Salmonella typh...
ZP_00602511  189 QKALEFAEkhkntefHMFVGAGn-TYGAAYEYAMCVLEEmQWIATKSIHAAEFFHGTIEMTDkSMSFVLLKged----qt 263 Enterococcus fa...
ZP_00603135  172 KDAKKFAErfkdekvIYVMSSGa-THEVAYSTSICLMMEmQWINSGTFHSGEFFHGPFEIVDkDVPFILLMndgktrnid 250 Enterococcus fa...
ZP_00604212  174 DRIKVFADkykdetmFYILGSGp-SYGHAYGFSICSLMEmQWLDSTSVHSGEFFHGPFEVTDkDTNFILLMsi-----gr 247 Enterococcus fa...
Q8X844       196 EKGRQLGElasqwpmIYTVAAGplRPLGYKEGIVTLMEF-TWTHGCVIESGEFRHGPLEIVEpGVPFLFLLgndesrhtt 274 Escherichia col...
ZP_01156559  177 DYAPRLARkd----vIYTMASGa-SYGAAYSFAICVLMEmQWINSQAIHANEFLHGPFEVLDeDSAFILFKglds-tral 250 Oceanicola gran...
YP_001311862 174 ERAKKYAEkyknepiTYVLGSGa-SYGHAYGFSICSLMEmQWMNASAVHSGEYFHGPFEVTDkETLYLLLMnegrtreld 252 Clostridium bei...
EDP14382     173 PSAKKFAEnykdapvIYVMSSGa-THMVAYSFSICLLMEmQWINSGSFHDGEFFHGPFEIVDkDVPFLLLMndgstrald 251 Clostridium bol...
Feature 1                                                                                        
1MOQ         286 LEKLKSNIEEVrargGQLYVFADqdagf-vssdnMHIIEMPhveev-iapiFYTVPLQLLAYHVAliKGTDVDQPRNLAK 363 Escherichia coli
NP_391141    259 ERALTFSKKYG----KKLTVLDAasydf-taiddSVKGYLAp--------lVLNRVLRSYADELAe-ERNHPLSHRRYMW 324 Bacillus subtil...
NP_459564    259 DRAIRFIERYQ----GKLQLIDAdkl-----giqDLSTDVGeyf----cglLHNCVLDVYNLALAt-ARNHPLTTRRYMW 324 Salmonella typh...
ZP_00602511  264 RPLVDRVERFVnk-ySDVVTVFDta--------dFELAGVPsamrqyvapmVMATALERVSAHFEk-VRDHSLDIRRYYR 333 Enterococcus fa...
ZP_00603135  251 ARALTFLERFDt--kTEVVDALDy----------GLSSHIAkevldyfnpfVITAVFRVYAEELSe-AREHPLTKRRYMW 317 Enterococcus fa...
ZP_00604212  248 TRALDERAKRFldkyAERVEIVD-----------AKELGLDmis-----deVSEFFNPILFYSILseYRSALADARNHDL 311 Enterococcus fa...
Q8X844       275 ERAINFVKQRT----DNVIVIDYa---------aISQGLHPwla-----pfLMFVPMEWLCYYLSiyKDHNPDERRYYGG 336 Escherichia col...
ZP_01156559  251 EERAETFLTRFg--sAENIMVLDae-------tlDLSGIDPalrgn-lvplIFFDTLWRFAYKIAdlRGHEMLEARRYMK 320 Oceanicola gran...
YP_001311862 253 ERALKFLNKYG----AKVEVVDCkelgisvidssVVEFFNPi---------VFYSILCVYREELAk-LRNHDLDTRRYMG 318 Clostridium bei...
EDP14382     252 SRALDFLNRFQ----AKTTLIDAkd--------fGLGSVIPstvkdyfnpmLITAVLRVYAEQLAi-LRNHPLTQRRYMW 318 Clostridium bol...
Feature 1           
1MOQ         364 SVT 366 Escherichia coli
NP_391141    325 KVE 327 Bacillus subtilis subsp. subtilis str. 168
NP_459564    325 KVE 327 Salmonella typhimurium LT2
ZP_00602511  334 TVE 336 Enterococcus faecium DO
ZP_00603135  318 KLT 320 Enterococcus faecium DO
ZP_00604212  312 DVR 314 Enterococcus faecium DO
Q8X844       337 LVE 339 Escherichia coli O157:H7
ZP_01156559  321 KLD 323 Oceanicola granulosus HTCC2516
YP_001311862 319 KVE 321 Clostridium beijerinckii NCIMB 8052
EDP14382     319 KLE 321 Clostridium bolteae ATCC BAA-613

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