1OLZ


Conserved Protein Domain Family
Ig_Semaphorin_C

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cd04979: Ig_Semaphorin_C 
Immunoglobulin (Ig)-like domain at the C-terminus of semaphorins
The members here are composed of the immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may be involved in ligand binding or dimerization.
Statistics
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PSSM-Id: 409368
Aligned: 7 rows
Threshold Bit Score: 95.2189
Created: 13-Mar-2007
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 2 residues -Click on image for an interactive view with Cn3D
Feature 1:dimer interface [polypeptide binding site]
Evidence:
  • Structure:1OLZ, human semophorin SEMA4D fragment, dimer interface defined by 3.5A distance.
  • Comment:Dimer interface involves both the Sema domain and the C-terminal Ig domain.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                   #                                                         #        
1OLZ_A     538 GSYRQHFFKH-GGTAELKCSqks----nlARVFWKFQNGVLkae----------spKYGLMg---rKNLLIFNLsegDSG 599  human
XP_421725  543 LPWKNRTVLR-GDDVLLPCDqrs----nlARAVWLLNGSEVpgt---------gqeRLRVGv----DGLLVTNTlpgHSG 604  chicken
Q14563     579 SPEERIIYGVeNSSTFLECSpks----qrALVYWQFQRRNEerkee------irvdDHIIRt---dQGLLLRSLqqkDSG 645  Homo sapiens
Q24323     573 VLKKKIVVTY-GQSVHLGCFvkipevlknEQVTWYHHSKDKgryei------ryspTKYIEtt--eRGLVVVSVneaDGG 643  fruit fly
P15391     182 QSLSQDLTMApGSTLWLSCGvppd-svsrGPLSWTHVHPKGpksllslelkddrpaRDMWVm---eTGLLLPRAtaqDAG 257  human
P19320     606 TAFPSESVKE-GDTVIISCTcg------nVPETWIILKKKAet------------gDTVLKsi--dGAYTIRKAqlkDAG 664  human
O75147    1086 TTPSPLCVAP-GEPVVLSCElsr----agAPVVWSHNGRPVqe-----------geGLELHaegprRVLCIQAAgpaHAG 1149 human
Feature 1                                   
1OLZ_A     600 VYQCLSEERvk---nKTVFQVVAKHVLEV 625  human
XP_421725  605 EYRCYGEERg----lXTLLAAYSLTVLPQ 629  chicken
Q14563     646 NYLCHAVEHg----fIQTLLKVTLEVIDT 670  Homo sapiens
Q24323     644 RYDCHLGGSl----lCSYNITVDAHRCTP 668  fruit fly
P15391     258 KYYCHRGNLtmsfhlEITARPVLWHWLLR 286  human
P19320     665 VYECESKNKv-----GSQLRSLTLDVQGR 688  human
O75147    1150 LYTCQSGAAp-----GAPSLSFTVQVAEP 1173 human

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