Conserved Protein Domain Family
PA_M28_1_3

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cd04822: PA_M28_1_3 
PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively little is known about proteins in this subgroup.
Statistics
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PSSM-Id: 240126
Aligned: 8 rows
Threshold Bit Score: 179.574
Created: 1-Feb-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
PA/protease or
Feature 1:PA/protease or protease-like domain interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
ZP_01091993  114 APLELGKQFNPLAAGGSGKFDL-PIVFVGYGITAPDl----lYDDYADTDVKGKAVLMLRKEPQGdphnphsafggphpt 188  Blastopirellul...
CAJ70990     496 KSFELEKDFRPLAFTASGVADG-ELVFAGYGISMPGedg-agYDSYAGIDVKDKVVLVLNYIPEKvemkrr-----hdln 568  Candidatus Kue...
YP_592558    104 AELQLTKDYVPFSFSSSGTVTA-PLVFVGYGASADEf----qYDDYAGQDVKDKIVVVLRYEPDSfskngk-----dglt 173  Acidobacteria ...
YP_827323     92 GGASRPLHAFTGGFYRDIAVRA-PVVFAGYGITALEy----aYDDYATVNASGRIVLIFDHEPQEdsaasvf--ngtght 164  Solibacter usi...
YP_827526    105 QTETFRAPEATANFGNEVTVTG-PVVFAGYGITAPEl----gYDDYTGIDARGKIVLIFNHEPQEndansif--ngagnt 177  Solibacter usi...
ZP_01671686  164 SHGELERDFLPFDFSDDGAVEA-EVVFAGHGITAPAl----gHDDYGGLDVKGKIVLVAQDFPREsdaaspf--rdprhy 236  Anaeromyxobact...
YP_822732    104 TTLHFPGDFVPFNFSQTGKLTG-PVVFAGYGITAPEy----hYDDYANLDVKGKIVVVLRHEPQEsdpnsvf--egktyt 176  Solibacter usi...
NP_968906    472 KKYTVSKDFEPVSFSKTGDFREaPVVFAGYGIKAPAsdkeaeYNSYKGLDVKGKWVLVLSDLPANvppqrr-----hyln 546  Bdellovibrio b...
Feature 1                                            ###                                         
ZP_01091993  189 rHATFSRKISNAYQHGAAAVIMVNNldel---esrREDQQnvwn--------tavsDIAKTQAEFsaldadAADEQKTEL 257  Blastopirellul...
CAJ70990     569 rYSGLRYKAMIAREHGAKALLVVTGpnsp---dagELLPLt--------------fDNASADSGIva--asISGDAAKAL 629  Candidatus Kue...
YP_592558    174 qHSHLITKAINARNHGAKAVIIVNGklad--needVLPRFgstsgpqdsgilliqvKNAVADEWFk-----AAGKSLTEV 246  Acidobacteria ...
YP_827323    165 lHAGRAAKVLNARRHGALAVLIATEpshhs-yilaSPQRAplrasa-----ppqaiDDPAQIPAFtl--seADVKDLLSV 236  Solibacter usi...
YP_827526    178 rYTNATYKSLNAQRHGAIGILSMMDpnnht-agqgRGGRGa--------------gQGAAARPRIpsetlvEGGPAIPTF 242  Solibacter usi...
ZP_01671686  237 rFAEWRYKATNAREHGAAALIGVRDvwaeghggadDLPPWrgqv--------ssraGIVAARVTAaa--laRAGVDVRAL 306  Anaeromyxobact...
YP_822732    177 qHAQFAAKATNAKLHGAIGVILINDranhp-gvpdDLEKFgvtagptnagigfvqvKEAAVDKWFt-----DAGKPLEKV 250  Solibacter usi...
NP_968906    547 mYSRLQHKVTVAKNEGAVGVIVTNGpesgl-pdkfGKIKFegslses--tlavlrlSTPAAQEMIr-----YAGQDLISL 618  Bdellovibrio b...
Feature 1                         
ZP_01091993  258 r---------dKLTDLA 265  Blastopirellula marina DSM 3645
CAJ70990     630 f----------SFIGKD 636  Candidatus Kuenenia stuttgartiensis
YP_592558    247 qmqiahsgkpnSFAFPA 263  Acidobacteria bacterium Ellin345
YP_827323    237 tgrt---pvelQDAIDA 250  Solibacter usitatus Ellin6076
YP_827526    243 tisa---svaaGIFAAA 256  Solibacter usitatus Ellin6076
ZP_01671686  307 a---------aPGEADG 314  Anaeromyxobacter sp. Fw109-5
YP_822732    251 qseidkdlkpqSFAFPA 267  Solibacter usitatus Ellin6076
NP_968906    619 qm--------kLDKGEA 627  Bdellovibrio bacteriovorus HD100

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