Conserved Protein Domain Family
PA_M28_1_2

?
cd04821: PA_M28_1_2 
PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively little is known about proteins in this subgroup.
Statistics
?
PSSM-Id: 240125
Aligned: 21 rows
Threshold Bit Score: 240.271
Created: 1-Feb-2007
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
PA/protease or
Feature 1:PA/protease or protease-like domain interface [polypeptide binding site]
Evidence:

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                       
ZP_01422361 108 PLAQgeQIAIRa-AMTNvdaVAIKDAPLVFVGYGVKAPERSWDDFKGLDLKGKVLVVLINDPDFesg-----agdFGGKA 181 Caulobacter sp. K31
YP_755590   128 GLSMg-EDVVYw-SKLNsadIAINDSELVFVGYGVVAPEYGWDDYAGLDVEGRTVVMLVNDPGYanpd----sglFNGNA 201 Maricaulis maris...
AAM38840     92 ALVNg-SDVTLq-SLRPqqaVALKNAPLVFVGYGISAPERQWDDYKGVDLRGKIAVVLINDADFespq----pgaFDGKA 165 Xanthomonas axon...
YP_192528   114 PLIQl-QDIYLs-TLLPedrLQVKNAPMVFVGYGVHAPERHWDDFKGVDLKGKVAVFLVNDPDFdaapgepvagrFGGKT 191 Gluconobacter ox...
NP_298110   109 SLTQgqEIAVRa-PLDGasqVALQAVPLVFVGYGVKAPERHWDDFKGVDLKGKIAVMLINDPDFetg-----qgdFDGKG 182 Xylella fastidio...
ZP_00952739 134 LQTN--VDVVYw-SQNPeeqVSLSDSDLVFVGYGVVAPEYGWNDYEGVDVTGKTVVILINDPGFadpd----sglFNGSA 206 Oceanicaulis ale...
YP_630850   129 HLDFh-TDFIAv-SGVQspeSKLAASELVFVGYGIQAPEYKWDDFKGMDLRGKTLLILNSDPEDdp-------qlFAGKT 199 Myxococcus xanth...
YP_827720   101 NFTWg-DDFVGt-SGTQr-pETSFEGRAVFVGHGITAPEFKWDDYKGVDVTGKVVVLFTNEPASndp------kfFDGRA 171 Solibacter usita...
ZP_01460512  24 SLRQg-QEVMVntQRPVk-rVKIDKAPLVFVGYGVAAAERQWDDFKGADLRGKIAVILINDPDFeaqpgeavrgkFGGQA 101 Stigmatella aura...
NP_635419   130 PLTFg-TDIVVg-TRTGqaeVKLDNSELVFVGYGVDAPEQQWNDYAGQDWKGKTVVMFVNDPGFhsnd----aklFDGKR 203 Xanthomonas camp...
Feature 1                                        ###                                            
ZP_01422361 182 MTYYGRWTYKYEEAARQGAAGVLIVHETaPASYGWATVKnSNTAtmFDIVraap--akvHPNLEAWIQRDVAVDLFKASG 259 Caulobacter sp. K31
YP_755590   202 MTYYGRWTYKYEEAARQGAAGVILIHQTaPASYGWNVVSgSWSGtqLDLArepg--qgtFADIESWITEDRARQMFDLAG 279 Maricaulis maris...
AAM38840    166 VTYYGRWTYKYEEAARRGAAGVLIVHETaPAAYGWGTVQsSGMSplFDIErsdadaraqHVPVRGWMQRALAVSLFKQAG 245 Xanthomonas axon...
YP_192528   192 MTYYGRWTYKYEEAARRGAVAALIVHDTaGASYPWSTVV-APGGeaYDVEhaat--esrPVPVQGWLEGKAAAALFQQAG 268 Gluconobacter ox...
NP_298110   183 MTYYGRWTYKFEEAARQGALGALIVHETaPASYGWATVAsSNTNsmFDVVrahp--eavHPKLEAWIQHDVAVQLFKDAG 260 Xylella fastidio...
ZP_00952739 207 MTYYGRWTYKYEEAARQGAEGAIIVHQTaPAAYPWGTVQsSWSGpqFTLAssa---gqeRADVQAWITEEKATELFDALD 283 Oceanicaulis ale...
YP_630850   200 RLWYGRWDYKYEQAAKMGAAGAIIIHTTpSAGYPWQVVQtSWTGeqFELPaae----gpRLQVKAWTTEQATRRVLQLAG 275 Myxococcus xanth...
YP_827720   172 LTYYGRWTYKYEEALRHGAAACIIIHTTpTASYGWDVVKsSWGReaPFVKlep---ngkALLLQAWVTRDAGEKLFELAG 248 Solibacter usita...
ZP_01460512 102 ATYYARWTYKFEEAARRGAIGALIIHETpGAGYGWSTVTaGNGQs-FDIVraqp--dkeKVLMQGWIQRDAAAVLLARAG 178 Stigmatella aura...
NP_635419   204 MTYYGRWTYKFEEAARKGAAAALIVHDTpGASYGWDVVKnSWSGpqYDLPakdd--pdpRLPVQGWISADIAKQLFADAG 281 Xanthomonas camp...
Feature 1            
ZP_01422361 260 LDFDL 264 Caulobacter sp. K31
YP_755590   280 LDFDT 284 Maricaulis maris MCS10
AAM38840    246 LDFEQ 250 Xanthomonas axonopodis pv. citri str. 306
YP_192528   269 LDLEA 273 Gluconobacter oxydans 621H
NP_298110   261 LDFHT 265 Xylella fastidiosa 9a5c
ZP_00952739 284 LDFAE 288 Oceanicaulis alexandrii HTCC2633
YP_630850   276 KDLGA 280 Myxococcus xanthus DK 1622
YP_827720   249 RNLDE 253 Solibacter usitatus Ellin6076
ZP_01460512 179 LSLEK 183 Stigmatella aurantiaca DW4/3-1
NP_635419   282 LDLAQ 286 Xanthomonas campestris pv. campestris str. ATCC 33913

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap