Conserved Protein Domain Family
PA_M28_1_1

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cd04820: PA_M28_1_1 
PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively little is known about proteins in this subgroup.
Statistics
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PSSM-Id: 240124
Aligned: 18 rows
Threshold Bit Score: 116.238
Created: 1-Feb-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
PA/protease or
Feature 1:PA/protease or protease-like domain interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                       
ZP_01610636 112 QSWTHGTDVLVGLNpn---epALDIAAPLVFVGYGIenAKLGINDYAGLDVKGKIVVTLRGFPQGLPSEea-----ahAS 183 Sphingomonas wit...
ZP_00952267 109 ESLTPGQDFVVSAHaa---ldEASIEADAVFVGYGLdaPQLGLDDYEGLDVEGKIVVVLMGTPGELPSDisa---hlnSS 182 Oceanicaulis ale...
ZP_01422075 121 GALTFGEDYLPSAQar---qaDTSVTAPLVFVGYGInaPERGRDDYAGLDVKGKIVVLLTGAPSGFQTEira---hysNT 194 Caulobacter sp. K31
YP_155418   112 VEFEFPKQFITGPShy---eeKDEITAPLVFVGYGMeaPEFGLDDYNGLDVEGKIVVMLTGRPEFLPSEeg-----ahLA 183 Idiomarina loihi...
YP_498095   101 GKETVLSDTAQVLVrpsltdkAVAVDAPLVFAGFGFdrPDLGFDDYKGLDAKGKIVVVLSGFPKGTPSElg-----ahLN 175 Novosphingobium ...
ZP_01112114 110 VNFDYPKEYLAGPSll---ntDASVKGEMVFVGYGIvaDELSHNDYKDLDVEGKIVVALAGKPSDFPSEega---hfaSG 183 Alteromonas macl...
YP_659628   117 VELAYPKQYITSASpv---seMASVKGQLVFAGYGIiaPELEHDDYADLDVKGKVVVVLSGKPASFPSEega---hfgST 190 Pseudoalteromona...
ZP_01450848 119 VALDYPKDFLTGKSml---etESAVTAEMVFVGFGVvsEEYGIDDYAGLDVEGKIVVRVPGRHASLPNEega---hisSS 192 alpha proteobact...
YP_761002   120 VPFTENVDYAMGNSls---apNVDVTGEAVFVGFGIvaPDLGRDDFEGLDLSGKVAVMLAGTPKGIQTEer-----ayYG 191 Hyphomonas neptu...
YP_756276   110 ETFAHGTGAFIGTNps---vlEAEVAGELVFVGHGVsaANRGHDDYDGLDVDGRIVVVMGGVPENVFEGlseerahhnSG 186 Maricaulis maris...
Feature 1                             ###                                           
ZP_01610636 184 ATKAQAADRHGAIGMVSIGTLLSMKTrPWAQSvh--fADEPSFAWVG---ADGKAFDEApgiRITASL 246 Sphingomonas wittichii RW1
ZP_00952267 183 RTKAQYAADNGAIGMIAVMPEGLSRF-TFERMap--yAAGESMTTEA---ASAASELQVraaISDAVA 244 Oceanicaulis alexandrii HTCC...
ZP_01422075 195 NVKRAEAARRGAVGVITLPTTSSEKRrPFERGva--nYQEWKMTWSDargVAYVRGAEApglATLSLK 260 Caulobacter sp. K31
YP_155418   184 NIKSDIAREKGAVGIITLHTPVREKTrKYETSvy--yTKTPRMTWLG---PNGLPKGEEqqlKGSAYI 246 Idiomarina loihiensis L2TR
YP_498095   176 SEKAVMAMKRGAIAVITVPTTEDSARrPWDKRva--mSDGPAKGWVG---ADGKAFARAtgiRGTATL 238 Novosphingobium aromaticivor...
ZP_01112114 184 YQKQKYAVDNGAIGMITITTPKNEKVrPYQSRln--yIHTPRMAWLDd-sGQPANSFSQl--KGGAYM 246 Alteromonas macleodii 'Deep ...
YP_659628   191 NEKKRHAAEHGAIGYVTITTPTAEKVrPYQNLln--yIHTPTVRWLDq-nGQPANVYPAl--KNSAYL 253 Pseudoalteromonas atlantica T6c
ZP_01450848 193 RERERYAVERGAVGMITVQTPKSEENrPYSRSln--yIHSVSMDWLD---KDGKASKASpqmKGSALL 255 alpha proteobacterium HTCC2255
YP_761002   192 TRKYANASDRGAIAVVSLETPTSRGVyPFERLiregrLDGASLTWLG---PDGAPFSRApnvQSGASV 256 Hyphomonas neptunium ATCC 15444
YP_756276   187 TTKRNVAAAHGAIGMISITGWTQERLtDFAAGf----GSRPSVRLTA---ATGPSGYDTv--QASANV 245 Maricaulis maris MCS10

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