5G5R


Conserved Protein Domain Family
CBS_pair_peptidase_M50

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cd04801: CBS_pair_peptidase_M50 
Click on image for an interactive view with Cn3D
Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains found in the metalloprotease peptidase M50
This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in peptidase M50. Members of the M50 metallopeptidase family include mammalian sterol-regulatory element binding protein (SREBP) site 2 proteases and various hypothetical bacterial homologues. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).
Statistics
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PSSM-Id: 341401
Aligned: 35 rows
Threshold Bit Score: 145.789
Created: 7-Mar-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 41 residues -Click on image for an interactive view with Cn3D
Feature 1:CBS repeat [structural motif]
Evidence:
  • None

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #########     #########     ######  ######  ######         #####             
5G5R_A      2 DVMNTEVVTVTPe--MTVSEVIDLILktkHLGFPVVEgERLVGIITlHDIIGVEPee----rVGNIMsr--evVAVSpNQ 73  Archaeoglobus fulg...
CAJ53167  253 DIMTERSDLDVVeqnVSVATLLERMFterHTGYPVVDnGGLVGVVTlDDARSVEEvereayrVSDVMtp--dvTTINpDA 330 Haloquadratum wals...
AAG20304  253 DVMTPASDVHTVaatASVADLMDSMLehrHTGYPVFRdATAVGMVTlDDARSVRAverdamrVADVMsd--dvYTIPgSA 330 Halobacterium sp. ...
CAI48106  263 DVMTPANEVRTVettATLDAILDRMFeerHTGYPVVEgGKLVGIVTlADIRNVHPekrsetrVADVMse--dlEAVSpDT 340 Natronomonas phara...
GAD52016  250 DVMTPASDVKRVnpdDTLSQLTERMFeerHTGYPVMEdGRVVGVVTlEDARDVQPverdaytVADVMst--dvETIGsDA 327 Halarchaeum acidip...
AEH39023  252 DIMTPVADLETVteeTTVADLLDRMLrerHVGYPVLRnGRFAGMVTlEDTQSVREverdayrVGDVMteagdvPTIRpDQ 331 Halopiger xanaduen...
ELY65435  252 ELMTPAPELDTVsteLPTAELLDRMLrerHTGYPVLEdGSLVGIVTlEDVQERAPdtg--gvVRDAMst--dpVTIPlDA 327 Natronococcus jeot...
ELY54422  253 DVMTPVDELDTVspeTTIAELLDAMMehrHTGFPVVEnDSIAGVVTlEDVRAVPPserdsrtVRAVMat--dlETLSpTE 330 Natronococcus amyl...
ERH03324  251 DIMTPRADLHTVsetTTVQELMQRMFrerHTGYPVMDaDQLVGLITlEDAREVREverdayqVSEVMat--nvITVGpKT 328 Halorubrum sp. J07...
ERG88647  251 QLMTDREALETVrpdATVAALIQRMFaesHTGYPVVGePGYVGIVTlDAATSVPEvereaylVEDVMqq--dvTAVRpTT 328 halophilic archaeo...
Feature 1                                           
5G5R_A     74 SAFEAFKIMSemGIGRLPVVEh-GRVVGIVSRSDLMRI 110 Archaeoglobus fulgidus
CAJ53167  331 DAMDAMQRMQenDIGRLPVIEn-TELVGLISRSDLMTA 367 Haloquadratum walsbyi DSM 16790
AAG20304  331 DATDALDALQehSVGRLLVVDadGEMVGLITRSDLMDA 368 Halobacterium sp. NRC-1
CAI48106  341 EAMDAMRQLAqhSVGRLVVTDefGNLAGLLTRSDLVTA 378 Natronomonas pharaonis DSM 2160
GAD52016  328 EAMDALERIQqsGIGRLIVVDddGGLVGLLSRTDLVTA 365 Halarchaeum acidiphilum MH1-52-1
AEH39023  332 PVMDALETMQgeGVGRMPVMNadGELAGLISRTDLMMA 369 Halopiger xanaduensis SH-6
ELY65435  328 EATTALRTLQeeNVGRLLVVDadGSLAGLLSRTDLMTA 365 Natronococcus jeotgali DSM 18795
ELY54422  331 EAWEALVSLQrnDIGRLVVLDdrERLAGLVTRTDLITA 368 Natronococcus amylolyticus DSM 10524
ERH03324  329 DAMEAMDTMQseDVGRLPVVTsgGVVVGLVTRTDFMTA 366 Halorubrum sp. J07HR59
ERG88647  329 GAMTALEAIQqeDTGRLLVVDd-DRLVGLISRADIMRG 365 halophilic archaeon J07HX5

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