Conserved Protein Domain Family
NPD_PKS

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cd04743: NPD_PKS 
2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Statistics
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PSSM-Id: 240094
Aligned: 5 rows
Threshold Bit Score: 524.769
Created: 1-Aug-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:FMN binding site [chemical binding site]
Evidence:
  • Comment:Based on homology to other members of the family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                ##                                                    #                 
BAC92167     337 TEYPIVQGPMTRVSDTAEFAEAVArgGGLPLLALALMrgEQVHALLSKTRSLLGDRSWGVGILGFVSHalREEQLKAVKE 416  Gloeobacter vi...
ZP_00418324  248 TRYPIVQGPMTRVSDVEGFAKAVAdgGGLPFIALSVMrqEQVQGLLAKTAELLGDKPWGVGILGFMPLelRQAQLEVVRQ 327  Azotobacter vi...
NP_828538    290 TELPVVQGPMTRVSDQAAFAAEVSghGALPFIALALSgaEQTRTVLERTRDALGHAPWGVGVLGFADEeiKAAQLEVVRE 369  Streptomyces a...
ZP_01017353  330 TRFPIVQGPMTHVSDTADFAVAVAegGGLPMVAVSLMrgEKVKDLLMETAEKIGDKSWGVGMLGFVPTetLADQRAAILA 409  Parvularcula b...
ZP_01586359  348 TRYPIIQGPMTRVSDVAEFAVSVAegGALPFLAFALMreAECAALLEETKARIGGKPLGVGILGFVDDalRAEQTAVIAA 427  Dinoroseobacte...
Feature 1                 #                   #                   #   ##                         
BAC92167     417 ikppfALIAGGRPDQAAHLESIGiATYIHVPVPrLLKMFLEqgaCRFVFEGrECGGHVGPlsSFLLWESMVQMLLAEVGP 496  Gloeobacter vi...
ZP_00418324  328 ikprfALIAGGRPGQARELEAIGiSTYLHVPSPgLLKGFVKdgaRKFIFEGgECGGHTGPlsSFILWESAIETLTSIEID 407  Azotobacter vi...
NP_828538    370 irpshAIIAGGRPAQAAALEAVGiSTFLHVPSPgLLKQFLEagaRKFVFEGaECGGHVGPrgSFPLWEAQLCVLDDFLAG 449  Streptomyces a...
ZP_01017353  410 akptfAVIAGGRPDQAREMEEQGiRSYLHVPSPvLLEQFIQngaKSFIFEGrECGGHIGPvgSFVLWSMMSDALLAANLS 489  Parvularcula b...
ZP_01586359  428 hkpdfALIAGGRPDQALALEAEGiPTWLHVPSPgLLALFLEsgaRRFIFEGrECGSHVGPrsSAVLWQQAIDALEAYYGP 507  Dinoroseobacte...
Feature 1                     ###                          ####                                  
BAC92167     497 Dka---grMHILFAGGIHDaaSAAMVSALAAPLAERGMKVGVLMGSAYLFTEEAVSCGAIVPQFQQQAIACRRTINLetg 573  Gloeobacter vi...
ZP_00418324  408 Dpa----sVQLLFAGGIHDelSAAMVSALAAPLVERGMKIGVIMGTAYLFTHEIVDSGAILPEFQSQAIACKETTLLqsg 483  Azotobacter vi...
NP_828538    450 AkngtaaeLQLLFAGGVHDerSAAMVTALAAPLSARGAAVGVLMGTAYLFTEEAVSAGAVLPLFQRQVIAAERTDLLeta 529  Streptomyces a...
ZP_01017353  490 Reea--gkIHILFAGGIFDgrSAAMAQVMATRVAEAGFKVGILMGTPYLFTEEAVTAGAINKTFQDVAIAATATASCatg 567  Parvularcula b...
ZP_01586359  508 Dap---idCELLFAGGVHDatSGAMVSALSAGLAARGAKIGVVVGTGYILTREAVASGAVLQKYQELALTSAKTMLLesa 584  Dinoroseobacte...
Feature 1                                                                                        
BAC92167     574 PGHASRCAVTPFAHEFYQTRRrmlqagnsaeevKNGLEDLTLGRLRTASKGMVRgpagie--------vvdeptQIKDGM 645  Gloeobacter vi...
ZP_00418324  484 KGMYTRCAVTPFCDEFNRTRRdmllalespekvLKVLELFNIGRLRMASKGVSQnpdrsagas--ryvripiedQRREGM 561  Azotobacter vi...
NP_828538    530 PGHATRCVRSPFTDEFAAVKEelaardvpgreaWERLEQLNVGRLRLASKGLERaggelh--------evgeerQLAEGM 601  Streptomyces a...
ZP_01017353  568 PGHASRCVTSQFVTDFRTKRTtmaregksgseiSEELEAMSLGRLRLASKGVSRpadgsrry-----eerseeeQREGGM 642  Parvularcula b...
ZP_01586359  585 PGHATRVVESPIVDEFFAEKArlrsekvdpdeiKDRLERLNVGRSRIASKGIDRnpdygkvagaekfvamtpeaQEKLGV 664  Dinoroseobacte...
Feature 1                
BAC92167     646 YMIGQVAT 653  Gloeobacter violaceus PCC 7421
ZP_00418324  562 YMLGEVAR 569  Azotobacter vinelandii AvOP
NP_828538    602 FMAGEVAV 609  Streptomyces avermitilis MA-4680
ZP_01017353  643 YMIGQTAT 650  Parvularcula bermudensis HTCC2503
ZP_01586359  665 YMIGQAAS 672  Dinoroseobacter shibae DFL 12

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