Conserved Protein Domain Family
NPD_FabD

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cd04742: NPD_FabD 
2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Statistics
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PSSM-Id: 240093
Aligned: 20 rows
Threshold Bit Score: 633.519
Created: 17-Jul-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:FMN binding site [chemical binding site]
Evidence:
  • Comment:Based on homology to other members of the family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                           ##                                                     #     
YP_439869    717 LGCPEFKRRFGLKYAYVAGGMVHGIASVRMVVAMAkaGMKGYFGTGGLslDAIRDAVRAIRGalpagepYGMNLLSGr-- 794  Burkholderia t...
ZP_01255381   70 LGDASFKEDYKLKYAYKAGAMANGIASTDLVIALGkkQMMGSFGAAGMipSRVKEAIATIQKalp-tqaYACNLIHSpie 148  Psychroflexus ...
AAM12912     643 LGSAAFRQAYNLRYAYMAGGMYKGIASVELVVKLVnsGYLAFFGAGGLstAAVEQAIVEIAQrtq-praFGMNLVCNlsn 721  Pseudomonas fl...
AAZ27595      76 LGDDAYKKQHGVKYAYHGGAMANGIASVELVVALGkaGFLCSFGAAGLvpDAVEDAIKRIQAelp-ngpYAVNLIHApae 154  Colwellia psyc...
YP_482016     80 LGAASFLTDYGVRQPYMTGAMANGIASPELVVAMAraGFLATYGAAGVlpDRIDDALGRIRRelg-papFACNLIHSpne 158  Frankia sp. CcI3
AAS47558       7 LGSRLFKEDYQVRYAYVAGAMAKAIGSSDLVIAMGkaGYVGFYGAGGMtlEEIETAIQRIQQglnrgepYGINVLANlad 86   symbiont bacte...
CAB52352      68 LGGRTFCEAHGVRFPYVAGEMANGIATTGMVAAMAraEMIGFFGAGGLplPEVERAVHSLAQelesrtnWGVNLIHSpae 147  Streptomyces c...
AAK57802      70 LGDPDFLAHYDLRFPYMAGAMANGIASPDLVIALAqqGFLASYGAGGVrlEQFDQALAKITSafq-gapFSVNFIHSpse 148  Agrobacterium ...
BAB78008     106 LGDRSFLDFHGVNYAYAAGAMAGGIASETLVIALGkaGFLASFGSAGLvpQRVEKAIFQIQQalp-tgpYAFNLIHSpse 184  Nostoc sp. PCC...
AAK72880    1588 LGSRAFMKTYGVSAPLYTGAMAKGIASADLVIAAGrqGILASFGAGGLpmQVVRESIEKIQAalp-ngpYAVNLIHSpfd 1666 Schizochytrium...
Feature 1                             #                                 #                        
YP_439869    795 --lEEATVDLYLREGVtSVEAAAymHVTPALARFKLAGLsvdrdgatvsaHKILAKVSRpEVATAFMSPIPEKFLERFVR 872  Burkholderia t...
ZP_01255381  149 kalEEGAVNLFIEHGVkVVEASAymNLSEQIVKYRAVGLsldaqdeiiiaNKVIGKISRkEVAERFMSPAPIQFLDKLLA 228  Psychroflexus ...
AAM12912     722 phkEIELVELFMRKGVtVIEAAAfmQITPALALYRLRGLikvgd-riearHRIVAKVSRpEVAQQFLDPAPARVVEKLLA 800  Pseudomonas fl...
AAZ27595     155 ealERGAVERFLKLGVkTVEASAylGLTEHIVWYRLAGLsknsdgsvkigNKVIAKVSRtEVGRRFMEPAPQKLIDKLLA 234  Colwellia psyc...
YP_482016    159 lelERAILAACLRHGVtCVEASAflELTPQIVAYRAAGLrpggaggvhvgHRVVAKVSRgEVAELFLRPAPDALLRPLVA 238  Frankia sp. CcI3
AAS47558      87 lekENHLIDLLLRYGVrHIEAAAfmQITPALVTFRLKGLhldasgkvqaaNTLMAKVSRpEIAQLFLSPVPASIVSLLLT 166  symbiont bacte...
CAB52352     148 pelEWRVAELLLRCGVpRISVSAfmELTPAVVLCSAQGLrrgadggvvrrTRLLAKLSRpEVAERFLSPAPPALLDLLVA 227  Streptomyces c...
AAK57802     149 pamENGLIDILLRYGVtIVEASAfmGLTPALVRYRALGLrrredgsidigHRLIAKVSRsEVASVFMEPAPENILKKLLA 228  Agrobacterium ...
BAB78008     185 ealEQGAVELYLKHGVrTVEASAymDLTPHIVRYRAAGLhlnsqgeiqthNKVIAKISRsEVAQKFLQPAPLKFLKSLVE 264  Nostoc sp. PCC...
AAK72880    1667 snlEKGNVDLFLEKGVtFVEASAfmTLTPQVVRYRAAGLtrnadgsvnirNRIIGKVSRtELAEMFMRPAPEHLLQKLIA 1746 Schizochytrium...
Feature 1                               #  ##                                      ###           
YP_439869    873 DGVIsdaQARAARAMPVADAVCVEADSGGHTDmgamPALLPAIRRLCADIAGERGYRd--kVPVGVAGGIGTPEAAAAAF 950  Burkholderia t...
ZP_01255381  229 VGKItqqQYELAQKVPMADDITVESDSGGHTDnrpmIVVLPIILQLRDEIQDKYQYKk--qIRVGAAGGIGTPASALAAF 306  Psychroflexus ...
AAM12912     801 QGLVtpeQAQWAQSVPMADDLVVEADSGGHTDmgvtVVLLPTIIRLRDSLCQAAGYTe--rVRVGAAGGIGSPESVAAAF 878  Pseudomonas fl...
AAZ27595     235 QGKVtqeQAELSKLVPMADDITAEADSGGHTDnrpfLTLLPTIIALRDEVQAQYNFSp--aLRVGAGGGIGTPEAALAAF 312  Colwellia psyc...
YP_482016    239 DGTLtaeQAALARTVPMADDITVEADSGGHTDrrplPVLLPEIIAVRDRIAAELGYRr--pPRVGAAGGIGTPSAVFAAF 316  Frankia sp. CcI3
AAS47558     167 EGRIneqEAELAGRIAVASDVCVEADSGGHTDmavtSVVLPRIIRLRDTLQQQYRFQs--pVRVGSAGGIGTPESAASAF 244  symbiont bacte...
CAB52352     228 RGSLtreEAALAALVPVAEDITVEADSGGHTDnrplSVLLPRIAALRDTVCRRFGYRr--pVRLGAAGGLGTPDAVAAAF 305  Streptomyces c...
AAK57802     229 QGAIseeQAALAAQVPIADDITAEADSGGHTDrrplVVLLPILLRQAQKVAEKNGYAk--pIRIGVGGGLGSPKAIAAAF 306  Agrobacterium ...
BAB78008     265 RGYItplQAALAEKVPLADDITVEADSGGHTDnrslVCLLPSIIALRDEIQHQYHYDh--pVRVGAAGGIGTPEAALAAF 342  Nostoc sp. PCC...
AAK72880    1747 SGEInqeQAELARRVPVADDIAVEADSGGHTDnrpiHVILPLIINLRDRLHRECGYPanlrVRVGAGGGIGCPQAALATF 1826 Schizochytrium...
Feature 1               ####                                                                     
YP_439869    951 vLGADFILTGSINQCTVESGisDVVKDMLQQINVHDTDYAPAGDMFELGAKVQVLRRGVFFPARANRLYELYKQYDSVDD 1030 Burkholderia t...
ZP_01255381  307 aMGAAYVVTGSINQACVESGtsEAVKDLLAKVTSTDITMAPASDMFELGVELQVLKRGTLFGARAKKLYEIYNRYQGIDA 386  Psychroflexus ...
AAM12912     879 mLGADFVVTGSINQCTPEAGtsDVVKTLLQDINVQDTDYAPAGDMFELGARVQVLKRGVFFPARANKLYDLWRRYDSLDE 958  Pseudomonas fl...
AAZ27595     313 nMGSAYIVLGSVNQACVEAGasEYTRKLLAQVEMADVTMAPAADMFEMGVKLQVVKRGSMFAMRAKKLYELYINYDSIEA 392  Colwellia psyc...
YP_482016    317 aLGAAYVVTGSVNQACVESGqsAAARALLAKAGPNDIDMAPASDMFEIGAEVQVLRRGTMFAGRGRRLYDLYRAHDSLDD 396  Frankia sp. CcI3
AAS47558     245 mLGAEFIVTGSINQCTVQAGtsETVKKMLQSIDVQDTAYAPAGDMFELGSKIQVLKKSVFFPVRANRLYDLWRNNGSLEQ 324  symbiont bacte...
CAB52352     306 aLGASYVVTGSVNQTAVEAGlsDEAKAMLCDADVADVAMAPSADMFELGVKLQVLSRGTMFARRAGRLYSAYRDHGSLEE 385  Streptomyces c...
AAK57802     307 aTGAAYVVTGSFNQACQESGssPSVRALLAKCGFADTTMAPVADMFELGVELQVLKRGTLFASRAKMLYDLYRRYDSLDA 386  Agrobacterium ...
BAB78008     343 mMGASYIVTGSINHSCIEAGtsDHTKQLLAQASMADMVMAPCADMFEMGVKVQLLKRGSLFPMRAQKLYDLYKTYGGIEE 422  Nostoc sp. PCC...
AAK72880    1827 nMGASFIVTGTVNQVAKQSGtcDNVRKQLAKATYSDVCMAPAADMFEEGVKLQVLKKGTMFPSRANKLYELFCKYDSFES 1906 Schizochytrium...
Feature 1                                                                                        
YP_439869   1031 LpdavrrqledkyfGKSLAEVYADCERYypadei-----erargnPKQKLALIFRWYFGFATRAALAGNEADKVNFQVQC 1105 Burkholderia t...
ZP_01255381  387 IpkderlkletktfKMPLEEVWNRCVSFfeerdpeq--iknaqgnPKRKMALIFRWYLGLSSNWANAGDPDRVMDYQIWC 464  Psychroflexus ...
AAM12912     959 LdektarqiqdsffKRSFDEVFEETRAYyskvapqe--idkalsnPKHKMALVFRWYFIHSTRLAMTGSEAQRVDYQVHC 1036 Pseudomonas fl...
AAZ27595     393 IpaderlkiekqifRSNLDDVWAGTEAFfterdpem--laraqssPKRKMALIFRWYLGLSSRWSNTGEKGREMDYQIWA 470  Colwellia psyc...
YP_482016    397 LsaedrnwlersvlRRSVDEVWADTVDYfsrrdpeq--ieraqanPKRRMALVFRWYLGLSSGWAISAAPDRITDYQIWC 474  Frankia sp. CcI3
AAS47558     325 LaptvrkelqdkyfKRSFDDIYQETERYyrkaspah--iekaerdPKLKMALIFRWYFVHTMRLALEGNHEQRTDYQIHT 402  symbiont bacte...
CAB52352     386 IppalraaierdvlGAPFEEVWQRTRAFweerdpae--avraeadPRHRMALVFRWYLGSSSRWAITGESTRRADYQIWC 463  Streptomyces c...
AAK57802     387 LpepvvqeleqklfKQSLADVWRMTADYfigrdpkq--vteaeadPKRKMALVFRAYLGKASHWANAGEEGRQIDYQIWS 464  Agrobacterium ...
BAB78008     423 IppeirqtletqifRKNLDQVWDETVAYfsqrdpeq--iarannnPKRKMALIFRWYLGLSSRWSTSGDEQRKMDYQIWC 500  Nostoc sp. PCC...
AAK72880    1907 MppaelarvekrifSRALEEVWDETKNFyinrlhnpekiqraerdPKLKMSLCFRWYLSLASRWANTGASDRVMDYQVWC 1986 Schizochytrium...
Feature 1                              
YP_439869   1106 GPALGAFNQWVRNTALENWRNR 1127 Burkholderia thailandensis E264
ZP_01255381  465 GPAMGAFNEWTKNSYLREAKNR 486  Psychroflexus torquis ATCC 700755
AAM12912    1037 GPSMGAFNQWVKGTDLEDWRNR 1058 Pseudomonas fluorescens
AAZ27595     471 GPSLGAFNSWVKGTYLEDYTRR 492  Colwellia psychrerythraea 34H
YP_482016    475 GPSLGAFNTWAAGSYLADVDRR 496  Frankia sp. CcI3
AAS47558     403 GPALGAFNRWVKDTPLEDWKNR 424  symbiont bacterium of Paederus fuscipes
CAB52352     464 GPAMGAFNRWAAGTFLAEPPHR 485  Streptomyces coelicolor A3(2)
AAK57802     465 GPAIGDFNEWTAGTYLEQPEGR 486  Agrobacterium vitis
BAB78008     501 GPAMGSFNEWVKGSYLELPENR 522  Nostoc sp. PCC 7120
AAK72880    1987 GPAIGSFNDFIKGTYLDPAVAN 2008 Schizochytrium sp. ATCC_20888

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