Conserved Protein Domain Family
DHOD_like

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cd04739: DHOD_like 
Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Statistics
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PSSM-Id: 240090
Aligned: 22 rows
Threshold Bit Score: 434.35
Created: 27-Jul-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative activeputativeputative FMN
Feature 1:putative active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                  #                                #   
BAB73611      2 DLTTNYLGLRLRSPLVPSASPmsgEIDNILWMEDAGAAAVVLPSLFEEQLs-LESYELHHHLtygtesfpESLTYFPehQ 80  Nostoc sp. PCC 7120
ZP_01359764   3 DLRTTYLGLSLKNPIVASSSPlskRIDNVRRLEDAGAAAVVLFSLFEEQIt-HEARELDYYLdrgaysfaESLTYFPdlE 81  Roseiflexus sp. ...
YP_589808     3 DLSTKYLGFKLKNPLVVSASPlckDQAIIKRMEDAGAAAIVLHSLFEEQIn-LESNELDRFLsfgsdvsaEAVDMFPdmG 81  Acidobacteria ba...
YP_286039     3 DLSTTYLGLSLKNPLVPSSTPlshDLDAVLHLEDAGAAAIVMHSLFEEDVr-HDEQMIDRFLvhpd-tfgEATGHLPfgH 80  Dechloromonas ar...
CAG35498      5 DLSTSYLGLDLKCPLVVGSCGltnSVKKIREIAEAGAGAVVLKSLFEEQIvaELGHNLESYEag----ypDAVDYIReyT 80  Desulfotalea psy...
ZP_00661028   3 DLSTTWMGLELKSPVIAASCTltgSVEQVSEAARCGAGAVVLKSLFEEQIqqDAARSLGGNEqrf--yyaQAEDYIReyS 80  Prosthecochloris...
AAQ67018      3 DLSTEFAGLRLKNPIVAASSGltrNLKTIKDLEAAGVAAIVLKSLFEEQIeaEMSQMMSPMDy------pEAADYINayV 76  Porphyromonas gi...
CAD78070     16 ELITSYLGMQLESPVVMGACPlttQSEAVRQIVAAGAGAIVLPSILQEQVmhRMIKATDPFGa------iERSGYQPqqD 89  Rhodopirellula b...
CAD73966      4 RLNTQFGGLSLRSPVVVGASPlsmNERTRMEMQEAGAGAIVLPSLFEEQVi-DWSWNHGRQLtpke-rmiLGQSDRTkhH 81  Rhodopirellula b...
YP_316225     3 DLSTDYLGLKLKNPLVPSASPlsrNLDNALRLEDAGAAALVMYSLFEEELr-AEDAMLDRFLtcpdfghsEAANFLPs-A 80  Thiobacillus den...
Feature 1                                                            #  #                       
BAB73611     81 DFrlgsEEYLNLIQKTKEKVKIPIIASLNGSSlDGWTEYARMIEQAGAAALELNTYSVHTDPEltseqIEQSYINMLKVV 160 Nostoc sp. PCC 7120
ZP_01359764  82 QYnlgvEPYLEHVHALKQRVSIPIIASLNGPSdGDWVEYARKVEQAGADALELNLYFLATDPDitgaaVEEQYLRLVRDV 161 Roseiflexus sp. ...
YP_589808    82 QYnigpDEYLEHIRKAKQSTKVPIIASLNGVSaGGWTRYARLMEQAGADAIELNIYYVPTDPDlsgstVEHMHAELVKVV 161 Acidobacteria ba...
YP_286039    81 DYqsrlDSYLEQIQRLKSRLAIPVVASLNGSSlSGWVELGKEMQGAGADALELNAWYMPSDPKisceaIEDHHVSLLQEL 160 Dechloromonas ar...
CAG35498     81 RDat-vEKYLDLVSAAKKAVDIPVIASLNCVSaNEWTSFATQIEKAGADAIELNISLLPSDPRmsgaeAEKKYTEIIDKV 159 Desulfotalea psy...
ZP_00661028  81 RGda-lWAYLELIRACSREVSVPVIASINCVSpGEWVQFAREIEEAGADGLEVNIFVMPSDPSkssaeNEKVYFDVLNAV 159 Prosthecochloris...
AAQ67018     77 QSne-iSKHLDFLREVKREVAIPVIASINCFRsDSWVDFAKQFEEAGADALEINVMRLNTDLFfdankAEQMYVDIISSL 155 Porphyromonas gi...
CAD78070     90 KYnggtEAYLRTISRLKGICSVPVIASMNGSSaGQWLQYAKEMESAGADALEFNLQQAVFDSKetsndIEARMCDLIRQV 169 Rhodopirellula b...
CAD73966     82 WVcpdgDSYLALVNRASSLQDIPIIASLNGYTaGGWMDFAGELEEAGASAIELNVHHSGAREYgssaeIEMTILDSIRDV 161 Rhodopirellula b...
YP_316225    81 PFedglERYVSQLQKLKARLGIPVIASLNGVSrSGWVELGRALEEAGADALELNVYHVAAEMWengeaVEARYLSLLRDL 160 Thiobacillus den...
Feature 1                 #                          ###                    #                   
BAB73611    161 KASVQIPVAIKLSPYFTNMANMAKRLDDa-GADALVLFNRFYQPDINLETLevqphVLLSTPqaMRLPLRWIAILYGHi- 238 Nostoc sp. PCC 7120
ZP_01359764 162 CSRVTIPVAVKMSPFFSSIANIAKQFSEa-GARGLVLFNRFYQPDFDLEALevvpnLKLSTSdeLRLPLRWIAILYGRi- 239 Roseiflexus sp. ...
YP_589808   162 KDSVKIPVAVKLGPQFSAFANLAKQLDHa-GANSLVIFNRFYQPDFDLEQLevtpnLVLSRSneLKLRIHWAAILFGKi- 239 Acidobacteria ba...
YP_286039   161 KTVVSIPVSMKLSPFFSSLPHFVHQIEMa-GAAGISLFNRFFQPDIDLETLsvvdrVQLSSSadTLLAMRWIAILRGSt- 238 Dechloromonas ar...
CAG35498    160 ASTVSVPLSLKMSQFSSGLAHLLTHLGWkqNINGFVLFNRYYRPDIDIDKMtitsaDIFSNPseMHESLRWVALLSDRi- 238 Desulfotalea psy...
ZP_00661028 160 TRAVRIPVAAKVSSYFSALAHTAEALPSt-GIGSLVMFNRFFSPDIDIDTLelkpaPLFSTPadYYNSLRWIAMLSGRv- 237 Prosthecochloris...
AAQ67018    156 IKAIRIPVVVKLSKSFANIPSLVDKLRAa-GAKGVVLFNRSYQPDIDIDKVqmvagDVFTSAgeISDTIRHAGIVSALvp 234 Porphyromonas gi...
CAD78070    170 RELVVIPVAAKISQRYTNLSSMATQLRQv-GVAGLVLFTHMPQWDVSTDRMhwtinWELSPTnsIGGILEGIVRARAGdq 248 Rhodopirellula b...
CAD73966    162 NSAITVPLFVKLSSNFTSLPHIARQLLS--GAQGMVLHGRAPKVDICLDTLrlasrWRITSAdeGVDSLDTLMQVHSCcp 239 Rhodopirellula b...
YP_316225   161 RHAVKLPIVMKLSPFFSSLPNFVKRLEHa-GAQGVVLFNRFYQPDIDLDTLcvvdrLHLSYPdeALLRIRWLSILHGRt- 238 Thiobacillus den...
Feature 1               #                    ##                                                 
BAB73611    239 nAHLAATSGIhnGHDVLKMLmaGANITMLCSVLLRhGIDHIRCIEQEMSQWMEKHeyesvqqlqgsmsqkhcpnpsaFER 318 Nostoc sp. PCC 7120
ZP_01359764 240 kADLALTSGVhtAEDVLKAMmaGARVAMMTSELLArGIDRIPAILQDIRTWMEEHeyesieqmqgsmsqqavdnpaaFER 319 Roseiflexus sp. ...
YP_589808   240 tADIAITGGVhtPEDIIKSMmaGARVAMTTSALLEqGVDYVGVLLKGVQKWMEEHgyesiqqmqgsmsqknvpqpaaFER 319 Acidobacteria ba...
YP_286039   239 kLSLAATGGVhtAEDALKMLlaGADVAHMASALLKrGPQALGEVLAAMTHWLDEHeyssvaqmkgsmsqqnspnpsdFAR 318 Dechloromonas ar...
CAG35498    239 eKDFVASTGIydGAALIKQLlaGATAAQIVSALYKnGIPYIGVLLEELKQWMEEKsfsrvddfrgklsysnienpavFER 318 Desulfotalea psy...
ZP_00661028 238 gCDLVASTGVhdSDALVKQLlaGAKAVEIASVLYLkGFEEIRTMLEGLEEYMDRLgfsslsdfqgrmsmkhslhpaaWER 317 Prosthecochloris...
AAQ67018    235 gISIASSTGIhdGEAALKCLlaGAHVTQICTVLYKkGPQFVAEMIATIESWMQVKgyysvsefrgklnaasvksatmYER 314 Porphyromonas gi...
CAD78070    249 aISIAASGGVsnSEDAIKAMiaGADVVMVTSAVYRrGPDAIRDIVDGIERHVESSrfrtlqdfraa-cprdhagdekSVR 327 Rhodopirellula b...
CAD73966    240 aMPLAACGGVgnADHLIKVLlaGADVAMVTSAIYReGASVIQTMLRGLVSFMEKHdmqsmqdlkt---qrplefssdEER 316 Rhodopirellula b...
YP_316225   239 gLTLAATGGVhsHDEALKMLlvGADVIHLASCLLQhGPARLTRILQDIERWMGERdyasvaqlkgsmsqknlldpaaMAR 318 Thiobacillus den...
Feature 1                
BAB73611    319 AQYMRALQT 327 Nostoc sp. PCC 7120
ZP_01359764 320 ANYIRALGS 328 Roseiflexus sp. RS-1
YP_589808   320 GNYMKVLSS 328 Acidobacteria bacterium Ellin345
YP_286039   319 AAYLHALSS 327 Dechloromonas aromatica RCB
CAG35498    319 TQFMKYYGG 327 Desulfotalea psychrophila LSv54
ZP_00661028 318 SQFMKHFSD 326 Prosthecochloris vibrioformis DSM 265
AAQ67018    315 MQFMKYFAN 323 Porphyromonas gingivalis W83
CAD78070    328 LEYIDPLTR 336 Rhodopirellula baltica SH 1
CAD73966    317 TAYIAALTA 325 Rhodopirellula baltica SH 1
YP_316225   319 LSYLRVLDS 327 Thiobacillus denitrificans ATCC 25259

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