1HUV


Conserved Protein Domain Family
MDH_FMN

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cd04736: MDH_FMN 
Click on image for an interactive view with Cn3D
Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Statistics
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PSSM-Id: 240087
Aligned: 5 rows
Threshold Bit Score: 652.668
Created: 18-Jan-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1HUV; Pseudomonas putida MDH binds FMN and a sulfate ion

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                        #                                                      #       
1HUV_A        9 EDYRKLAQKRLPkMVYDYLEGGAEdEYGVKHNRDVFqqWRFKPKRLVDVSRRSLQAEVLGKRQSmPLLIGPTGLNGALWP 88  Pseudomonas putida
NP_773041    29 DDYRSLAKRRLPrMVFDYLDGGAEsERSLHRNLGAFaaINFAPRRLVDVSHRNSSVSLFGRTLPtPFVVAPTGLNGALWP 108 Bradyrhizobium j...
NP_928426     9 ADYRTLAKKKLPkIIFDYLEGGAEdEKGLRYNQQIFdrWRFIPHRLIDVSKRDISCTLFNKVWSaPFAIAPTGLNATFRP 88  Photorhabdus lum...
YP_555152     8 EDYRRLARKRLPrIVFDYLDGGAEdEIGLQHNRDAFrsVKFQPRRLVDISKRTTTASLFGKSVTaPLVIAPTGLNGIFWP 87  Burkholderia xen...
ZP_01502334  12 GDYRSEARRRLPrMVFDYLEGGADdESGLRHNRAAFdrWELRPRRLIDVSKRVQSTELLGRQISsPLVIAPTGLNSAFWP 91  Burkholderia phy...
Feature 1                          #                      #                          #      #   
1HUV_A       89 KGDLALARAATKAgIPFVLSTASNmSIEDLARQcdGDLWFQLYVIhREIAQGMVLKALHTGYtTLVLTTDVAVNGYRERD 168 Pseudomonas putida
NP_773041   109 DGDVALARAARSAgIPFVLSTASNaTIEDVAERagGDLWFQLYVVqRDLARLLVGRAKEAGYrVLVLTVDVAVNGKRDRD 188 Bradyrhizobium j...
NP_928426    89 NGDLILARVAAKEnIPFILSSAANmTIEDVARQcdGEKWFQLYVVcPELAEQMVKRALASDYtTLVITVDVAVNGYRERD 168 Photorhabdus lum...
YP_555152    88 DGDLALVRAAGKFdIPFALSTASTsSIEKVADAatGDIWFQLYVVhRKLAELLVKRALAAGYsTLVLTTDVGVNGKRERD 167 Burkholderia xen...
ZP_01502334  92 NGDLSLARAASKAgIPFALSTASNmSIEEVSRGadGDLWFQLYVVhRNLAKSLVSRARAASYsTLILTTDVAVNGFRQRD 171 Burkholderia phy...
Feature 1                                                                                       
1HUV_A      169 LHNRFKIP--------------PFLTLKNfegidlgk-----mdkanleMQAALMSRQMDASFNWEALRWLRDlWPHKLL 229 Pseudomonas putida
NP_773041   189 LRNGFAIPfrqtprsvldavthPRWALGQirhglpqlanfaspdatdvnAQAALMRRQMDASFCWQDLQALRDaWPGRLI 268 Bradyrhizobium j...
NP_928426   169 IRNQFCLPlryrpavlldgclhPSWLLRFlcngmpqlanfvmtenigvdVQVAVMSRQMDASFNWQSLEQLRAlWPHKLL 248 Photorhabdus lum...
YP_555152   168 ARNGFGMPikysprtivdgilhPRWSLDLvrhgvpqlanfasdhvqdteLQAALMSRQMDASFAWDDLKWLRDlWPRTLL 247 Burkholderia xen...
ZP_01502334 172 LRNGFAMPfkvtprgaldgishPRWLWSYltngmpqlknfatddasdtaSQAAVLRREMDASFGWDDLRRLRDdWPGKLL 251 Burkholderia phy...
Feature 1        #                       #  #                                                  #
1HUV_A      230 VKGLLSAEDADRCIAEGaDGVILSNHGGRQLDCAISPMEVLAQSVAKTG-KPVLIDSGFRrGSDIVKALALGAEAVLLGR 308 Pseudomonas putida
NP_773041   269 VKGIMTATDVNRCRELGvDAVVLSNHGGRQIEDVQAPIDLLAEISNQNA-MPLLVDGGIRrGADAVKALALGAKAVLLGR 347 Bradyrhizobium j...
NP_928426   249 VKGLVRPEEAKKCIELGaDGVILSNHGGRQLDGTLSPMETLSATVQAMY-QPVLIDSGFRrGSDIVKALALGANMVLLGR 327 Photorhabdus lum...
YP_555152   248 IKGISRADDAARCFSLGaDGVILSNHGGRQLDSAIAPIEALRETAAQLH-KPILIDSGIRrGSDVVKALALGAQAVLLGR 326 Burkholderia xen...
ZP_01502334 252 VKGIVTAEDAERCVEIGaDGVIVSNHGGRQLADLPAPIDALPSISDATPtTDLILDSGIRrGADVVKAVALGATAVMLGR 331 Burkholderia phy...
Feature 1                                                 
1HUV_A      309 ATLYGLAArGETGVDEVLTLLKADIDRTLAQIGCpdITSLSP 350 Pseudomonas putida
NP_773041   348 AILYGLAAaGEEGAGHVLQILTAEFDTTLALVGCpdPARLNR 389 Bradyrhizobium japonicum USDA 110
NP_928426   328 AVLYGLAAtGEQGVSEVIRLLKEDIERTLVHIGSpsIRGLTP 369 Photorhabdus luminescens subsp. laumondii TTO1
YP_555152   327 ATLYGLASrGEAGVADVLSIIQNEIDITLAQIGCtdAASVTS 368 Burkholderia xenovorans LB400
ZP_01502334 332 ATLYGLSAkGEAGVSDVVAMIKEEIDRSLALIGYssIMEVDR 373 Burkholderia phymatum STM815

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