1ZNN,2NV1


Conserved Protein Domain Family
pdxS

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cd04727: pdxS 
Click on image for an interactive view with Cn3D
PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Statistics
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PSSM-Id: 240078
Aligned: 31 rows
Threshold Bit Score: 477.123
Created: 10-Jul-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active sitemultimer
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1ZNN; Geobacillus stearothermophilus PLP synthase with bound MPD and sulfate

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  #                  #                                     #         
1ZNN_F     42 RGMAEMQKGGVIMDVVNAEQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPTVIEEVMNAVSIPVMAKVRIGHYVEA 121 Geobacillus stearo...
O59080     17 RGFAKMVKGGVIMDVTNAEQARIAEEAGAVAVMALHKVPADIRKAGGVARMAPVEKIQEIMDAVTIPVMAKCRIGHEAEA 96  Pyrococcus horikoshii
Q8TQH6     18 RGFARMQKGGVIMDVTTPEQARIAEEAGAVAVMALQAVPADIRKAGGVARMADPEIVQQIIETVTIPVMAKARIGHFVEA 97  Methanosarcina ace...
Q8TVL8     10 TGFARMLKGGVVMDVTNVEQAQIAEDAGAVAVMVLEKVPADIRAAGGVARMCDPAKIEEIMDHVTIPVMAKCRIGHVAEA 89  Methanopyrus kandleri
Q8ZUF0     51 VGFPAMLKRGVIMDVTNVEQAQIAEDAGAVGVMVLDKLPYDVRRAGGVARMADLKVIEEVMAHVTIPVSAKVRIGHYYEA 130 Pyrobaculum aeroph...
Q9HKS5     17 RGFSAMTKGGVIMDVTTADQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPMKIKEIMDAVSIPVMAKVRIGHISEA 96  Thermoplasma acido...
Q9HP57     19 RGFAKMQKGGVIMDVVNREQARIAEDVGAVAVMNLEAVPADIRKRGGVARMADPASLTGIIEEVSIPVMGKSRIGHRKEA 98  Halobacterium sp. ...
Q9UWX3     53 HAFPIFQKGGVVMDITNVQQAQIAEEAGAVAVMVLDKLPYDVRKSGGVARMADPKIIEEVMSSITIPVMAKVRIGHYYEA 132 Sulfolobus solfata...
Q9WYU4     12 KGFAEMFKGGVIMDVTSAEQAKIAEEAGAVAVMALERVPADIRKEGGVARMASIAKIREIMEAVSIPVMAKVRIGHIAEA 91  Thermotoga maritima
Q9YFK2     50 LGFPIYQKGGVVMDVTNVEQAGIAEDAGAVAVMVLDKLPYDVRKAGGVARMADVKVIEQVMSSITIPVMAKVRIGHYYEA 129 Aeropyrum pernix
Feature 1                                                                   ###               
1ZNN_F    122 RVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQ 201 Geobacillus stearo...
O59080     97 RILEALGVDMIDESEVLTPADPFFHIYKKKFTAPFVCGARNLGEAVRRIWEGAAMIRTKGEAGTGNIIEAVRHVRLVNEN 176 Pyrococcus horikoshii
Q8TQH6     98 EILEALGVDMVDESEVLTPADPFYHIDKTQFTVPFVCGARNLGEALRRINEGAAMIRTKGEAGTGDVSQAVKHMKQIQGE 177 Methanosarcina ace...
Q8TVL8     90 QVLEAIGVDMIDESEVLTPADEEHHINKWEFEVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVAEAVRHMRIIRRE 169 Methanopyrus kandleri
Q8ZUF0    131 FLLEQVGVDLIDESEVLTPVDEQHHINKWMFTVPFVNGARELCEALRRISEGASMIRSKGEAGTGNVAEAVKHFKSIYGA 210 Pyrobaculum aeroph...
Q9HKS5     97 YVLEKIGVDMLDESEVLTPADPFFHLYKKNLTVPVVSGARNLPEAVRRIFEGAAMIRTKGEAGTGNIIEAVRHIRKVNEE 176 Thermoplasma acido...
Q9HP57     99 EILQAVGADMIDESEVLTPADDEYHIDKREFTAPFVCGARNLGEALRRIDEGAAMIRTKGEAGTGDVNQAVHHQRNIKSA 178 Halobacterium sp. ...
Q9UWX3    133 KLLEALGVDMIDESEVLTPADEEHHINKWEFSVPFVNGARNLGEALRRTSEGASMIRTKGEAGTGNVSEAVKHMKIINSE 212 Sulfolobus solfata...
Q9WYU4     92 KILEELGVDFIDESEVLTPADDRFHINKHEFKVPFVCGARDLGEALRRIAEGAAMIRTKGEAGTGNVVEAVKHMRRVMEQ 171 Thermotoga maritima
Q9YFK2    130 MILESIGVDMIDESEVLTPVDEKHHINKWLFKVPFVNGARSLAEALRRIAEGASMIRTKGEAGTGNVAEAVRHMKLIMGD 209 Aeropyrum pernix
Feature 1                                                                                     
1ZNN_F    202 IRKVVNmseDELVAEAKQLg-------------------------------------aPVEVLREIKRLGRLPVVNFAAG 244 Geobacillus stearo...
O59080    177 IRLIQRmtdEEIYGVAEKFaepylrlafsvkeisglpkrvlenepiyegftyreivedIYKILLEIKKLGRLPVVNFAAG 256 Pyrococcus horikoshii
Q8TQH6    178 IRALAGktkEELIMVAREIe-------------------------------------aPIELVVETAKMQRLPVVNFAAG 220 Methanosarcina ace...
Q8TVL8    170 ISELTRldkEELYGKAKEYg-------------------------------------vPFDLVAEVASLGRLPVVNFAAG 212 Methanopyrus kandleri
Q8ZUF0    211 IKSLAAgdeERVRDFARQCq-------------------------------------vPFELVALTAKLQRLPVITFAAG 253 Pyrobaculum aeroph...
Q9HKS5    177 ISVLKRmsdEQLRAVASNIsasyfvlreeaskdlmgvegklsydsayagmgrsriereILAILRQIRRMGRLPVVNFAAG 256 Thermoplasma acido...
Q9HP57    179 IRKLEGmdyEERDMWARDHe-------------------------------------aPRELVHETAEMGRLPVVNFAAG 221 Halobacterium sp. ...
Q9UWX3    213 IRSLISmseEDRVKKAREYq-------------------------------------vPYQIVELTAKIKRLPIVNFAAG 255 Sulfolobus solfata...
Q9WYU4    172 IKQVTKmedEELVAYGKEIg-------------------------------------aPVELLREVKRLGRLPVVNFAAG 214 Thermotoga maritima
Q9YFK2    210 IWRLRGlsaEERLRVAREYg-------------------------------------vPHQLVDLTARLGRLPVVNFAAG 252 Aeropyrum pernix
Feature 1     #                  #                                                            
1ZNN_F    245 GVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSk--gLGGAMRGIdiatlLPEHRMQE 322 Geobacillus stearo...
O59080    257 GVATPADAALMMAMGMDGVFVGSGIFKSSNPPKMARAIVEAVNHWDEPDVLAEISr--eIGEPMRGQai--eELQVRMEE 332 Pyrococcus horikoshii
Q8TQH6    221 GVATPADAALMMRLGADGVFVGSGIFKAENPEKMAKAVVEAVNNYDNPVKLAEISk--gVGAGMKGIsadmiPAQEALQE 298 Methanosarcina ace...
Q8TVL8    213 GIATPADAALMMQLGADGIFVGSGIFKSDRPQEMAEAIVEATAYYDDPEVVAEVSknlgDEVAMRGLeiseiPEEERMQL 292 Methanopyrus kandleri
Q8ZUF0    254 GIATPADAALMMWLGADGVFVGSGIFKSQDPRERAEAIVLATAHWDDPETVVEAQkmvsERGAMMGIdirtlKPEELLQT 333 Pyrobaculum aeroph...
Q9HKS5    257 GVATPADGALMMELGADGVFVGSGIFKSPNPEKMARSIVEAVENYRDYDVVEKASeg-lQGMPGVDIes--iPKDMRLQE 333 Thermoplasma acido...
Q9HP57    222 GIATPADAALMMHHGCDGIFVGSGIFGAENPEAMGRAVVDAVNNHDDPERLAEIAs--nIGEGMQGDpnadlPEDERMQD 299 Halobacterium sp. ...
Q9UWX3    256 GIATPADAALMMWLGADGLFVGSGIFKSQDPDERAKAVVLAAACWEYPEIVLEAQkmisEQKSMMGIdikslKPEELLQV 335 Sulfolobus solfata...
Q9WYU4    215 GVATPADAALMMMLGADGVFVGSGIFKSKDPRKMAKAMVLAVTYWDNPRILLKISe--dIGEPMRGLdv--eELEVRMQE 290 Thermotoga maritima
Q9YFK2    253 GIATPADAALMMWLGADGVFVGSGIFKSSDPSERAAAIVLATSMWDDPEAVAEAQrmvsEAKSMMGIdirklSPEELLQV 332 Aeropyrum pernix
Feature 1       
1ZNN_F    323 RG 324 Geobacillus stearothermophilus
O59080    333 RG 334 Pyrococcus horikoshii
Q8TQH6    299 RG 300 Methanosarcina acetivorans
Q8TVL8    293 RG 294 Methanopyrus kandleri
Q8ZUF0    334 RG 335 Pyrobaculum aerophilum
Q9HKS5    334 RG 335 Thermoplasma acidophilum
Q9HP57    300 RG 301 Halobacterium sp. NRC-1
Q9UWX3    336 RG 337 Sulfolobus solfataricus
Q9WYU4    291 RG 292 Thermotoga maritima
Q9YFK2    333 RG 334 Aeropyrum pernix

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