Conserved Protein Domain Family
BAH_plantDCM_I

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cd04716: BAH_plantDCM_I 
BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Statistics
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PSSM-Id: 240067
Aligned: 7 rows
Threshold Bit Score: 181.489
Created: 19-Sep-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAK71870   107 RQIYELNDDAYVQSGeg-----kDPFICKIIEMFEgvngkLYFTARWFYRPSDTVMkefei------linkKRVFFSEIQ 175  thale cress
BAC53936    26 GQIYNLGDDAYVQASsd-----eDDYICKIVEFFQavdgmQYFTAQWFYRAKDTVIkahdq------fidnKRVFFSEIK 94   common tobacco
AAK15805   187 NIVYCLGDDVYVKAGen-----eADYIGRITEFFEgtdrcHYFTCRWFFRAEDTVInslvsinvdghkhdpRRVFLSEEK 261  Zea mays
NP_193637  577 GHTFSLGDFAYIKGEe------eETHVGQIVEFFKttdgeSYFRVQWFYRATDTIMerqat------nhdkRRLFYSTVM 644  thale cress
O49139      78 GVLINLNDDVYVTGLpg-----kLKFIAKVIELFEaddgvPYCRFRWYYRPEDTLIerfsh------lvqpKRVFLSNDE 146  thale cress
BAF34637   116 SITYNLNDDAHVQSEed-----eKPFICKIAEIFEgcdgkMYFTAQWFYRACDTVIqkhee------middKRVFISDIK 184  field mustard
Q94F87     519 SICFFIGEPLSCEEAqerwrwryELKMEKATSEFSg---fTEQRIQCVYKFFSFIMerqat------nhdkRRLFYSTVM 589  thale cress
AAK71870   176 DTNELGLLEKKLNILMiplnentke-tipatencDFFCDMNYFLPYDTFEAIQQ 228  thale cress
BAC53936    95 DDNPLGCLVKKIKIVAipsnvrppl-keslrsnsDYYYDMMYLLPYSSFVSLPQ 147  common tobacco
AAK15805   262 NDNVLDCIISKVKIVHvdpnmdpka-kaqliehcDLYYDMSYSVAYSTFANISS 314  Zea mays
NP_193637  645 NDNPVDCLISKVTVLQvsprvgl----kpnsiksDYYFDMEYCVEYSTFQTLRN 694  thale cress
O49139     147 NDNPLTCIWSKVNIAKvplpkitsrieqrvippcDYYYDMKYEVPYLNFTSADD 200  thale cress
BAF34637   185 DVNSMGVLLNKLKILMipltent-----evtescDYYCNMKYRLPFSTLEALQS 233  field mustard
Q94F87     590 NDNPVDCLISKVTVLQvsprvgl----kpnsiksDYYFDMEYCVEYSTFQTLRN 639  thale cress
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