Conserved Protein Domain Family
CBS_pair_arch1_repeat2

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cd04632: CBS_pair_arch1_repeat2 
Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in archaea, repeat 2
The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).
Statistics
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PSSM-Id: 341395
Aligned: 12 rows
Threshold Bit Score: 158.648
Created: 30-Nov-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:CBS repeat [structural motif]
Evidence:
  • None

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1     #########   #########     ######   ######  ######                               
YP_330980 130 TEEVVTLREdDTLGKAINHLRENAISRLPVVNdngKLTGIITtHDIADFAVRKMDRQRTGDRr----------------- 192 Natronomonas phara...
AAG19915  129 TEHVVTVDEdDSMGRVINLLREHGISRLPVVDdagLLSGIVTrYDIVDFVVRDTEKTTVGDRs----------------- 191 Halobacterium sp. ...
ADB61038  134 TAEPVTLKEdDGIGRAINQLREHGISRLPVLNengYLSGVVTtHDIADFVIRENHTTTTGDRv----------------- 196 Haloterrigena turk...
AAV46445  129 TRDVITVSEdTNVGQVVNLLRKHGISRLPVLGdddGLTGMVTrHDIVDVVVRDMNKTTRGDRs----------------- 191 Haloarcula marismo...
GAD52816  134 TADVVTVSEdATLGTIINRLREHGVSRLPVLDeggDLTGVVTtYDLVNFVTRDIEKTTTGDRr----------------- 196 Halarchaeum acidip...
AGN02459  134 TDEVVSIAEdDGIGTAINRLRENTISRLPVVNengYLSGIVTtHDISEVAVRNMDVMGEGDRa----------------- 196 Salinarchaeum sp. ...
BAJ47607  134 TKDVITINAdDTIGKAISIMRDQGVSRLPVVNn-gYLVGIVTvTDVAEKIIKPRTRPSLGEVa----------------- 195 Candidatus Caldiar...
ADG13073  137 TRHVITINEnETIGKARALMRDNNIGRLVVVDddgKPVGIVTeTDILTKVLKPKRRMRAGDLk----------------- 199 Methanocaldococcus...
CAI49538  129 SEELISIEPqTSFGKALHSFRDNRIAHLPVVDe-gSAVGVVSlYDVTDIAVRATTQSQGGDAggtdpfggeissssgrar 207 Natronomonas phara...
AGK60913  136 NPEVITVKTyDGISKALATMRNHGISRVVVVDdenKVVGIITgKDIVDRVVSLGKDDRLGYLs----------------- 198 Archaeoglobus sulf...
EMA70685  129 TEKVISATPdTTIGKALNMLREGRIAHLPVVDd-gEAIGMVSlYDIVDFTTRGGTKSQGGSPgdfggrhgge-------r 200 Halorubrum aidinge...
EJN59519  129 TADLCTVAPrDTLGTALNLFRERRITHLPVLDd-dALVGIVSvADVVSFITRSVSKSKGGDTgtvsagrq---------- 197 Halogranum salariu...
Feature 1                       #####                                                   
YP_330980 193 --------GDTERMLDLPVYDAMNSPVQTISaEASVRDAVERMFENDFGGLVVTpddndeFVAGILTKTDVLRA 258 Natronomonas pharaonis D...
AAG19915  192 --------GEIERLLDLPVSDEMTSPVKTASfDDSVRDAVDDMLAHDYSGVIVTpddderAVGGILTKTDVLRA 257 Halobacterium sp. NRC-1
ADB61038  197 --------GDTQRLLDVPVYDIMASPVETTTlDTTAQEAVETMLEKDYAGLIVTpedddrMVIGVITKTDVLRA 262 Haloterrigena turkmenica...
AAV46445  192 --------GEIERVLDMPVYDVMSSPVETAKlGDSVEDAVARMLENDFAGLVVTpedddtHVAGILTKTDVLRA 257 Haloarcula marismortui A...
GAD52816  197 --------GEVERMIDLPVADVMSEPVTTVRpDDTVESAVRTMLGNDYAGLVVTtenepdTVIGVLTKTDVLRA 262 Halarchaeum acidiphilum ...
AGN02459  197 --------GDIDRILDLPVYDVMANPVVTTTtDTDARVAVEQMLDHDIGGLVVTpadddrLVQGILTKTDVLRA 262 Salinarchaeum sp. Harcht...
BAJ47607  196 --------GEKARTLSNPVKSIMTREVVTARgNETVVEAVERMKQYGFSSLVVTer---nRVVGIVTLMDALSP 258 Candidatus Caldiarchaeum...
ADG13073  200 --------GEKVPRMGQPVKMIMSSPLITLDyDASVADAARLMKEYDIRGVPIVkg---nMLKGIITRSDIAKY 262 Methanocaldococcus infer...
CAI49538  208 rggfgareGERDRLLDLPVRDVMVTPVRTVTpDETLEDAVAAMFDAGVSSLVVTrd---gEPDGILTKTDILDA 278 Natronomonas pharaonis D...
AGK60913  199 -------mKEKEKTLSIVVESIMSRPVITVErNDTIAKAIGLMIENDISSLVVTrg---sIPEGVVVKKDLLEY 262 Archaeoglobus sulfatical...
EMA70685  201 hgglgargGDSDRMLDLPVRNLMSDVVVTVRrSAPLDEVVETMFEREISSVVVLgde-rdDPIGVLTKTDVLEA 273 Halorubrum aidingense JC...
EJN59519  198 hggfgareGDTDRMLDLPVRDLMTEPVDRITaDAGLDTAVERMLDVGCSSLVVVdd--deAPIGIVTKTDVLRS 269 Halogranum salarium B-1

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