Conserved Protein Domain Family
ExoVII_LU_OBF

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cd04489: ExoVII_LU_OBF 
ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Statistics
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PSSM-Id: 239935
Aligned: 127 rows
Threshold Bit Score: 52.9072
Created: 7-Jul-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
generic bindinggeneric binding
Feature 1:generic binding surface I
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              ###          #### #           ### #              #      ###        ###   
Q8UIM4       35 QVRVRGEISGYrgphsSGHAYFSLKDDR------ARIDAVIWKGtfsrlkfrPEEGMEVIATGKITTFpgsSKYQIVIE- 107 Agrobacterium tu...
Q8FQP1       30 HLWVEGQLAQInvkpnWKLSYLTLRDVEq----eVSVQLTCPTEiirnrptpLKDGDRVIVYGKPAFYagrGSFSLWVT- 104 Corynebacterium ...
CAI37623     29 FIWVEGQVTQVnmkstWRFSYITLRDVNl----eASVSLTVETSalknlatpVKDGDRIVVHGKPSFYskrGSFSLWVT- 103 Corynebacterium ...
AAT89447     68 TAWVEGEITQWgv--sGGNVYGKLKDLNe----dATVGFTIWSSvkaripadLKQGDRVIAAVKPNYWlkgGTLTMQVS- 140 Leifsonia xyli s...
AAZ54506     29 RIWIEGQVAELhr--rGGMAYITLRDPVa----nVSARVTCSIRvlraadppPEQGARVVVYAKPDFYvprGTFSFQAL- 101 Thermobifida fus...
AAK45396     28 AVWVEGQLAQItmrpdAKTVFMVLRDPAa----dMSLTVTCSRDlvlsapvkLAEGVQVVVCGKPSFYtgrGTFSLRLS- 102 Mycobacterium tu...
ZP_00379404  52 SVWIEGQVVELnh--rGKASYLTLRDTDv----eTSLPVQIWKNvlertgapLSEGSHVVANLKADFWtktGRLTMRAN- 124 Brevibacterium l...
AAP99157     29 TFLLHATVSKAql--kNGHLWLTLTDGK------ASISAVIWSSslknisfrPVEEDGVELLGKLNFWq--NRATLVVQv 98  Prochlorococcus ...
NP_696898    81 SAWVTGQITQInt-rrAGSAYITLRDDFe----dIAMEVNGFGRfaaa-asqFVQGDRVVIHGKPNLWmkrTSLSLRGD- 153 Bifidobacterium ...
CAD67324     39 ATWIEGEVTQLsp--rRIGVFLTLKDMNeskhleFFLPFDAFKDe-------VEVGNRVKIHGKLEFWa--TSGQIKVKg 107 Tropheryma whipp...
Feature 1              
Q8UIM4      108 -SLEPAG 113 Agrobacterium tumefaciens str. C58
Q8FQP1      105 -DIRPVG 110 Corynebacterium efficiens
CAI37623    104 -EIRQVG 109 Corynebacterium jeikeium K411
AAT89447    141 -DMRHVG 146 Leifsonia xyli subsp. xyli str. CTCB07
AAZ54506    102 -EIRHVG 107 Thermobifida fusca YX
AAK45396    103 -EIRAVG 108 Mycobacterium tuberculosis CDC1551
ZP_00379404 125 -DIRAVG 130 Brevibacterium linens BL2
AAP99157     99 iQIRPTL 105 Prochlorococcus marinus subsp. marinus str. CCMP1375
NP_696898   154 -TILKVG 159 Bifidobacterium longum NCC2705
CAD67324    108 fEIQSVG 114 Tropheryma whipplei TW08/27

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