2HPI


Conserved Protein Domain Family
DnaE_OBF

?
cd04485: DnaE_OBF 
Click on image for an interactive view with Cn3D
DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Statistics
?
PSSM-Id: 239931
Aligned: 258 rows
Threshold Bit Score: 43.2675
Created: 7-Jul-2006
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
generic bindinggeneric binding
Conserved site includes 19 residues -Click on image for an interactive view with Cn3D
Feature 1:generic binding surface I
Evidence:

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1             ###             #### #     ### #                   #      ###         ###  
2HPI_A      1046 LLSGMVEEVVRKPTRsggmmARFTLSDETGALEVVVFgrayegVSPKLke-----dIPLLVLAEVEKge----eLRVLAq 1116 Thermus aquaticus
ZP_00949873 1287 SLACILTDIRHLTTKtnkgwAIFTAEDYHNTYEFKIYgedylkYRHLLipnsflyvKAFIREGFTNRqtgkksdPRIQFn 1366 Croceibacter a...
ZP_01118206 1279 AFAGIITDVQHRVSKagkgwAMFTAEDYGDSNEFRIFgedylrMQHFLvpnqflfiRATIQPGWTSKegv-vgePRLKFi 1357 Polaribacter i...
ZP_01105322 1311 SFAGVITDVQHRIAKngkgwALFTLEDYMDTFEFRIFgeeylkFRHFLminsfiylKVFVREGWVNRetgkkgdPRMQYn 1390 Flavobacterial...
EAS20973    1283 TFCGVISDVQHRITKtnkgwGMFTVEDYEDSFEFRLFnedylkFRHFLvpnsfihcKIKIKEGWIDKktgkptdPRINFm 1362 Flavobacteria ...
CAL67972    1294 TLGCVVVDVQHRVSKngkgwAIFTVEDYDESYEFKIFgeeylrMKHFFvpnnfihmKIFVKEGWTNKdtgkkgePRIQFr 1373 Gramella forse...
ZP_01253643 1286 SLAGVVTDVNHKVSKtgkgfATFVLEDYNESHEFWIFgeeylkFRHFLiqdn-fvhLKLRATQFTNRdtgepgrTRIGFv 1364 Psychroflexus ...
ZP_01243885 1320 NFAGIINNVQHRVAKngkgwAAFNLEGYDESYEFKIFgeeylkFRHFLiqnnfaflKILIKDGWVNHdtgkktdPRMQFv 1399 Flavobacterium...
BAD47459    1131 TMGGIVTSVRRGISKngnpyGIAKIEDYSGSAEIPFFgndwvtFQGYLge-----gTFLFIKARCQPkqwrpdeLDVKIt 1205 Bacteroides fr...
YP_676728   1030 TVAGIVTKVNVRQSKngkpfVLFTIEDYSGSLDLALFgedylkHAHFIni-----gEFLFMKGSLKPkwgregeLDFKIt 1104 Cytophaga hutc...
Feature 1                    
2HPI_A      1117 AVWTLeEVLEAP 1128 Thermus aquaticus
ZP_00949873 1367 NFEMLqDVLERY 1378 Croceibacter atlanticus HTCC2559
ZP_01118206 1358 EMKLLhDIMDEL 1369 Polaribacter irgensii 23-P
ZP_01105322 1391 SFILLqEVMESF 1402 Flavobacteriales bacterium HTCC2170
EAS20973    1363 AMQQLqDLMASS 1374 Flavobacteria bacterium BBFL7
CAL67972    1374 EMNLLhDIMDKN 1385 Gramella forsetii KT0803
ZP_01253643 1365 SFKQLqDVLKEN 1376 Psychroflexus torquis ATCC 700755
ZP_01243885 1400 EIRQLqDILEAF 1411 Flavobacterium johnsoniae UW101
BAD47459    1206 SMELLpDVKEQL 1217 Bacteroides fragilis YCH46
YP_676728   1105 TTQLLaDVRAKL 1116 Cytophaga hutchinsonii ATCC 33406

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap