Conserved Protein Domain Family
S1_RecJ_like
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cd04473: S1_RecJ_like 
S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease. The function of this family is not fully understood. In Escherichia coli, RecJ degrades single-stranded DNA in the 5'-3' direction and participates in homologous recombination and mismatch repair.
Links
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Statistics
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PSSM-Id: 239919
Aligned: 18 rows
Threshold Bit Score: 99.2185
Created: 19-Jun-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
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RNA binding
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:RNA binding residues of the RNA PolymeraseII RPB7 subunit, confirmed by mutagenesis
Scroll to Sequence Alignment Display
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Feature 1                                #       #         # #                                   
CAF30870     119 VVYVLDNMFTMNDLEEGKFYKGKINRTEKYGVFVQLNEKTRGLLRfrevv-gkrpsDFKIGDEIIVQVselklekRELDL 197 Methanococcus m...
AAG19805      24 DVVFDFRGDSPDQLTPGRFYRGTVDGFAEFGVFVDVGGTVTGLLHrsevpgrvdslAWDVGDDVFVQVtdv-hdnGNIDL 102 Halobacterium s...
YP_503159      8 IVYSLGDGCSITDIVIGKTYTGTIQGFANFGAFVYLNSSIKGLIHksn-----mlmSHREGDTVIVRVgni-rdnGNIDL 81  Methanospirillu...
NP_613444    121 KVKVLSPACGYEDVEEGELYKGKVSRVEKYGVFIELNDRTLGLLHrrdmg-dkepqDFSIGDEVVVKVtdvrpedGEIDF 199 Methanopyrus ka...
YP_657351     23 IVYDLAPNCTREDIEHDANYHAVVNGVVEYGIFIDIADDISGLVHdsn-----ldrSYEVGDRLTVTLes---vrDNGDL 94  Haloquadratum w...
YP_136073     19 IVYDLADQCTSDDLEEGALYHATVNGTVEYGVFVDLSDAVSGLVHdsn-----llgQYDVGDDLIVELge---irPDGDL 90  Haloarcula mari...
BAA29414     117 VVYVLDNACDYEDVEVGKYYKGIIDRVERFGVFVRLNKHVLGLIKkkdl---lgkrQYIPGEEIIVQVldvrpdrKEIDF 193 Pyrococcus hori...
NP_070166    100 HAYRLRNSCGIEDVRINRVYVGTVSAVTDIGVFVNLNKRLRGLIHrrnl----gnnRFSEDEEILVQVsgi-glsGEIDL 174 Archaeoglobus f...
YP_001030174   4 IVYRLGPGCEVDDIVEGNMYIGKVQGFATFGTFVQLNDRTKGLLHksn-----vltEKHERDSIVVLVnqv-rpnGNIDL 77  Methanocorpuscu...
ZP_02014747   33 TVYDLASDCTLEDAEVDALYHAEVNGVVDYGIFVDVSDALSGLVHesn-----ldgDYAVGDRLVVRLtev-kenGDVAF 106 Halorubrum lacu...

Feature 1           
CAF30870     198 RYV 200 Methanococcus maripaludis S2
AAG19805     103 GWS 105 Halobacterium sp. NRC-1
YP_503159     82 EEI 84  Methanospirillum hungatei JF-1
NP_613444    200 TIE 202 Methanopyrus kandleri AV19
YP_657351     95 AFD 97  Haloquadratum walsbyi DSM 16790
YP_136073     91 SFE 93  Haloarcula marismortui ATCC 43049
BAA29414     194 LEA 196 Pyrococcus horikoshii OT3
NP_070166    175 KPV 177 Archaeoglobus fulgidus DSM 4304
YP_001030174  78 REV 80  Methanocorpusculum labreanum Z
ZP_02014747  107 DDE 109 Halorubrum lacusprofundi ATCC 49239

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