1KHI


Conserved Protein Domain Family
S1_Hex1

?
cd04469: S1_Hex1 
Click on image for an interactive view with Cn3D
S1_Hex1: Hex1, S1-like RNA-binding domain. Hex1 protein is the major component of the Woronin body in filamentous fungi. The Woronin body is a dense vesicle and plays a vital role in filamentous fungi cell integrity. When cell damage occurs, Woronin bodies seal the septal pore to prevent further cytoplasmic bleeding. Hex1 protein self-assembles to form the solid core of the Woronin body vesicle. The Hex1 sequence and structure are similar to eukaryotic initiation factor 5A (eIF5A), suggesting they share a common ancestor during evolution. All members of the EF superfamily to which Hex1 belongs, contain an S1 domain, which has been shown to bind RNA or single-stranded DNA and often interacts with the ribosome.
Statistics
?
PSSM-Id: 239915
Aligned: 14 rows
Threshold Bit Score: 124.077
Created: 15-Jun-2006
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:possible RNA binding site based on comparison with E. coli CspA.
  • Citation:PMID 9753699

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                             #                                #    ##             
1KHI_A     102 VFKQYRVLDMQD-GSIVAMTETGDVKQNLPVIDQSSLWNRLQKAFESGRGSVRVLVVSDHGREMAVDMKVVHGSRL 176  Neurospora crassa
AAW66612   133 VFKQYRVLDLQE-GNVVAMTETGDVKQGLPVIDQSNLWARLLRSFESGRGSVRVLVVNDHGRELAVDMKVVHGASL 207  Ophiostoma floccosum
AAQ56234   150 VFKQYRVLDMAD-GYVTAMTETGDVKQGLKVIDQSNLWSRLQQAFESGRGSVRVLVLNDGGHELAVEMKVVHGSRL 224  Hypocrea jecorina
AAF67173   147 VYKTYRILDIQE-GTIVALTESGDVKSGIPVIPQGNLYQRIKDAFLEGRGSVRALVINDGGRELVVDYKIIHSSRL 221  Emericella nidulans
EAS31259   134 VYKTYRILDLRDdGRITAMTETGDIKQGIRVIDQGGLWNRISDAFSDGRGSVRALVINDGGRELVVDYKVIHGSRL 209  Coccidioides immitis RS
XP_388913   95 VFKQYRVLDMQE-GQIVAMTETGDVKQGLPVIDQSNLYSRLHNAFESGRGSVRVLVLNDGGRELAVDMKVIHGSRL 169  Gibberella zeae PH-1
XP_662299  147 VYKTYRILDIQE-GTIVALTESGDVKSGIPVIPQGNLYQRIKDAFLEGRGSVRALVINDGGRELVVDYKIIHSSRL 221  Aspergillus nidulans...
EAU33125   393 VYKTYRILDLRDdGKIVAMTETGDVKQGLPVVPQGHLFRRIREAFEEGRGSVRALVINDGGRELVVDYKVIHASRL 468  Aspergillus terreus ...
BAE63635   102 VYKTYRILDIRD-NQIVAMTETGDVKQGIPVVPQGELFSKIKAAFEDGHGSVRALVINDGGRELVVDYKVIQSSRL 176  Aspergillus oryzae
XP_388283  133 TFMQYRLVNVDD-GKIVAMTETGYIKQGLSVIDQSDLYARILEAFDSDRGSVRLLVLNDNGRELAVDMKVVHGSRP 207  Gibberella zeae PH-1

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap