1X6O


Conserved Protein Domain Family
S1_eIF5A

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cd04468: S1_eIF5A 
Click on image for an interactive view with Cn3D
S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain. eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed.
Statistics
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PSSM-Id: 239914
Aligned: 35 rows
Threshold Bit Score: 83.3556
Created: 7-Sep-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
RNA binding
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:possible RNA binding site based on comparison with E. coli CspA.
  • Citation:PMID 9753699

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                      #                            #      ##        
1X6O_A     95 VKTYTYSVLDIQanedpslpAHLSLMDDe-GESREDLDMPpdpALATQIKEQFDs-GKDVLVVVVSAMGTEQVLQTKNA 171 Leishmania brazilie...
EAT86932   88 VRRQEYQLLDVTd------dGFLSLMSDd-GSTKDDVKVPe-gEVGTKIQKMFTeeGKDINVIVLTAMGEEAAIDAKEA 158 Phaeosphaeria nodor...
NP_010880  85 VKRNEYQLLDIDd-------GFLSLMNMd-GDTKDDVKAPe-gELGDSLQTAFDe-GKDLMVTIISAMGEEAAISFKEA 153 baker's yeast
CAB16195   86 VKRDEYQLVNIDd-------GYLNLMTTd-GTTKDDVRLPe-gELGNEIEEGFDe-GRDLIITVVSAMGEETALACRDA 154 fission yeast
AAW42840   87 VRRQEFQLLDIQd-------GFLNLMDSd-GGSKDDVKVPe-tEIGQQIMADFEa-GKDLMVTIISAMDEEQAISYKEA 155 Cryptococcus neofor...
XP_651531  87 VKRTEFSLIGINd-------GYASLLLEs-GETRDDLKLPe-gEMGQKIQADYDd-GKELIVAVQTAMGMEAIIDYKEA 155 Entamoeba histolyti...
BAE66267   82 VYRNEYMLVNIDe-------GFLNLTNQd-GTMKDNVKVPg-gGLGQQIEQDFEa-GTDLLIAVISAMGEEHAVSVREA 150 Aspergillus oryzae
XP_657348  96 IKRVEYSLQDIDd-------GYLTLLDEd-GTVRSDIKLPk-nELGKEIEHEFN--EKSLICIIQVFGDQEMVVGYKED 163 Entamoeba histolyti...
P38672     91 VKRTDYQFSYIDe-------DFLVLIDSn-GEEKRELKMPe-gELAKRIEKLEEe-GKDFFVGVQTAMGEEAAIDVKEA 159 Neurospora crassa
P34563     88 VKRREYILMSIEd-------GFCSLMDPesCELKDDLKMPe-gDLGNTIREALEkdEGSVLVQVVAACGEEAILGYKIS 158 nematode

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