1U0L,1T9H


Conserved Protein Domain Family
S1_YloQ_GTPase

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cd04466: S1_YloQ_GTPase 
Click on image for an interactive view with Cn3D
S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Statistics
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PSSM-Id: 239912
Aligned: 45 rows
Threshold Bit Score: 71.0546
Created: 16-Jun-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
homodimerRNA binding
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:homodimer interface [polypeptide binding site]
Evidence:
  • Structure:1U0L_A: Thermotoga maritima YjeQ GTPase S1 domain binds the C-terminal domain of another YjeQ GTPase. Contacts determined at 3.5A distance

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #               ##             ##                                     
1U0L_A     11 RRGIVVSFHSNMVTVEDeetGERILCKLRGKFrlq----nlKIYVGDRVEYTPde-------tGSGVIENVLHRKNLLTK 79  Thermotoga maritima
NP_972055   1 MKGLVLKGSNNIFYVECe-dGKFRSCSIKGKVlkdsalyynPLAAGDFVNLEPdth-----sdDEGLITGLIERKNSFLR 74  Treponema denticol...
ABI60504   15 LLGRVVAAYGRHFEVETa--HTIYSCVVRGKKk--------GVVCGDWVEMLPtt-------dGQGIIETILSRSSLFYR 77  Nitrosomonas eutro...
NP_519061  20 EHGLVIAAHGRHYLVERk-gGGLLQCFPRGKRs--------ECAVGDRVIFEAta-------vDQGVVVRVEERRNLLHR 83  Ralstonia solanace...
YP_411410  14 LRGEIVAAFGRHFLVKTa-dESTLTCVLRGKKs--------GAACGDWVEIYQta-------sEQGVIERILPRSALLYR 77  Nitrosospira multi...
NP_902035   4 STGQIIRSHGRRFIVEAd--GQTFDCTTRGKRv--------DYACGDIVDILIqn-------rEQAVIERAHERRSLLYR 66  Chromobacterium vi...
NP_881301   6 AEGLIIAAHGRHYTVELa-dGSLRQCFPRGKKn--------GPAVGDRVRITPqg-------rDEGAIEAVLPRRNLLFR 69  Bordetella pertuss...
YP_987547   8 LEGLVVASHGRHCVVESa-gGERRICHPRGKKs--------QAVVGDRVLWQPaapgqgrghgDEGTIEKVLERRNLLYR 78  Acidovorax sp. JS42
YP_933020  16 TPGTITAAFGRHYEVETa--EGRIQCYPRGKKs--------VFACGDEVEVLPgg-------dGQGVIEQLQPRRNLLWR 78  Azoarcus sp. BH72
YP_584722  21 ESALIVAAHGRHYVVERa-dGTHLHAFPRGKKs--------DAAVGDHVRVELas-------vDQGVITAIDPRKNLLHR 84  Ralstonia metallid...

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