Conserved Protein Domain Family
RhoGAP_fRGD2

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cd04399: RhoGAP_fRGD2 
RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Statistics
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PSSM-Id: 239864
Aligned: 10 rows
Threshold Bit Score: 244.164
Created: 14-Apr-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative GTPasecatalytic
Feature 1:putative GTPase interaction site [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                         #                            
CAG61740   494 FGIDLEtrcrl------------dkkvvPLIISAVLTYMDsvYPDMINDKIRTLTWISPVKLnstHQLRSLLNKRQFsde 561  Candida glabrata...
EAL20732   586 FGIDLRrwsgergwkslvhapkrekgaiPEALEALLGALAe-MYDSISEEERRRAWIYEVPLmetHMLRNAINNPKIpvd 664  Cryptococcus neo...
CAG87626   470 FGVDLTvksrl------------drkvvPLIIQCILSHLDkvYPDLVNDQERINLWTMPIHLtqvHQLRSQLNDTNDtsk 537  Debaryomyces han...
NP_428268  473 FGVDLEtrcrl------------dkkvvPLIISSIFSYMDkiYPDLPNDKVRTSIWTDSVKLsltHQLRNLLNKQQFhne 540  baker's yeast
XP_500942  472 FGVELErqalaefe-------egnakqvPMFAQVLLTQLD--SSYSVDDDLSKVWRSDAVSLketHQLKRLVDTVTKlda 542  Yarrowia lipolyt...
XP_503587  493 FGLDLElrcrg------------drrkvPSIVSTVLNHMDdqYPLLDNDEVRLNVWTVSVSLkttHALRKELNTGKPvdk 560  Yarrowia lipolyt...
CAE76173   470 FGVDLEarara------------dkkrvPIIVTTLLTYLDhhYPDLEGDEARRGVWLHEVSLkdtHKLRAKVNNGKPpsl 537  Neurospora crassa
CAH00417   459 FGIDLEtrcrs------------dnrlvPLILSAILLYMDqaYPEMENDYKRAIVWTKPVKLhevHQLRQLLIKPFKees 526  Kluyveromyces la...
NP_983190  487 FGIDLEtrcrl------------dkkvvPVLVSSILSYMDqlYPDMPDDHARATVWTAPVRLqyvHHLRKLINEKPGsae 554  Eremothecium gos...
1175379    452 FGVDVEflshr------------dkkrvPIIVSTILSYLDllYPTLASDEVRQNIWLVNSPLssvHQLREALNHSSSvtk 519  fission yeast
Feature 1                           #   #                                                      
CAG61740   562 keilellkvndveASTVASIVKLYLLELPQPLIPkDLSEVLSELyiqfpldmdksgdne-----ncdnelqvdenkhkRI 636  Candida glabrata...
EAL20732   665 dlis---ivkkfnAPVAAGTIKLYLLELNPPVMGwEGWEDAKAVypavga-----------------------dqdvdMT 718  Cryptococcus neo...
CAG87626   538 ine----ilsgthPMILTNVLKLYFMELPDSVIPhDYYDLIKSLyqnypvsn------------------ddstvnesRI 595  Debaryomyces han...
NP_428268  541 geifdilstsklePSTIASVVKIYLLELPDPLIPnDVSDILRVLyldypplvetalqnstsspenqqdddneegfdtkRI 620  baker's yeast
XP_500942  543 rr------ltslkASEIIALLKLYLLELPDSVVScNIYDLIRSAyssnpse---------------------gdsltaRL 595  Yarrowia lipolyt...
XP_503587  561 ai------lkkyeLPVAASILKLYLLELPDSLVPhQYYDVVKRLysagpgg--------------------qppspeeRI 614  Yarrowia lipolyt...
CAE76173   538 ev------faefdVPTVASLLKLYLLELPDSLVSsHVYEIIRTIynttqd-----------------------ssedaRI 588  Neurospora crassa
CAH00417   527 eiiei-lrskkvePSTVASVFKIYLLELPKSLITeDAYDILKVLyreyppsd------------------ikeetenqRV 587  Kluyveromyces la...
NP_983190  555 edifrifgeanaePAHVASVLKLYLLELPVPLISnDIYDVMRGLytefppgsda--------------dedqrlvnsqRV 620  Eremothecium gos...
1175379    520 ev------lsqytPSVVIGVLKLYFLELPDSIVPsSAFELIRSIymnhs------------------------ndtpyRL 569  fission yeast
Feature 1                                               #  ##                                  
CAG61740   637 TGLFTILSsLSKTHLATLDSIATHFHRLIMILKMGDnk--eDIASTFTDSISQEFASCiiqas---------tvedNDLG 705  Candida glabrata...
EAL20732   719 SAVASVLGrLPGSHIFALDAVIKHFRTLIDTTKSAEpd--eVYTTKLALSVGRTILRPqfetd---------ltigDRTP 787  Cryptococcus neo...
CAG87626   596 NGLQNLLVdLPKCSLATLDAILTHLSRLIHIIGSKDeelskTLQLKLSKEFANLILRPkldllsfdgsnnsstyinDKHQ 675  Debaryomyces han...
NP_428268  621 RGLYTTLSsLSKPHIATLDAITTHFYRLIKILKMGEng--nEVADEFTVSISQEFANCiiqsk---------itddNEIG 689  baker's yeast
XP_500942  596 QKIESTLSqLPQVHVDTLEAIIKHLKRFIVMSKISD-----EDVDYIFTDLARVIIRPwtqsa---------ttmnSKHG 661  Yarrowia lipolyt...
XP_503587  615 QSLQNTFAqLLVSNIATLDAITTHLARLIRLTNAGD-----EYILQLSQELSHCFLRPrvesp---------vtfgDRHA 680  Yarrowia lipolyt...
CAE76173   589 PVLQQTLSqLRLTNIATLDACMNHFTRLIELTSADE-----EYVAKLATTLAPCILRPrtets---------ltmeEKHA 654  Neurospora crassa
CAH00417   588 RGLTTALStLSKSNMVTLDVITTHFERLIEIIRMNKseesqELAENLRDAISQEFANClihpi---------lptaNELG 658  Kluyveromyces la...
NP_983190  621 QGLTSTLGtLSKPRVATLDVLTNHFYRLIKIIRMSEsqeskDLADHLVAEIAKEFAPCiikac---------fpigPELG 691  Eremothecium gos...
1175379    570 RLLQNLLSqLRRVNLATLSAIITHLNRLITLTPNKE-----TFTINLANSLSLCISRPatwnl---------giqhDKHP 635  fission yeast
Feature 1      #                  
CAG61740   706 YKIFYDLLTNKEHIFSNLK 724  Candida glabrata CBS 138
EAL20732   788 SLFLADLIRHYTALFPPLV 806  Cryptococcus neoformans var. neoformans B-3501A
CAG87626   676 YTFMNDLFEYKDTIFKELR 694  Debaryomyces hansenii CBS767
NP_428268  690 FKIFYDLLTHKKQIFHELK 708  baker's yeast
XP_500942  662 VKFLRDLVENGDKVFSSLD 680  Yarrowia lipolytica CLIB122
XP_503587  681 YRLVNDLLVYRDQIFPELK 699  Yarrowia lipolytica CLIB122
CAE76173   655 YRLIRDLFAHKDAIFSELK 673  Neurospora crassa
CAH00417   659 YKVFEDLLRHRKKIFKELK 677  Kluyveromyces lactis NRRL Y-1140
NP_983190  692 RQIFSDLLMYKKQVFRDLK 710  Eremothecium gossypii
1175379    636 TKFMEDLLTYGPSIFEELR 654  fission yeast

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