Conserved Protein Domain Family
RhoGAP_fRGD1

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cd04398: RhoGAP_fRGD1 
RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Statistics
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PSSM-Id: 239863
Aligned: 6 rows
Threshold Bit Score: 313.186
Created: 14-Apr-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative GTPasecatalytic
Feature 1:putative GTPase interaction site [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                            #                                        
EAL20009  601 FGVDLGEQLlrdg-avvPKIVEKCTQAIEmyGLESVGVYRLSGTTsrvQALKAALDKDvdavdil------sdewsaDIN 673 Cryptococcus neofo...
586378    470 FGVPLESLIefeq-dmvPAIVRQCIYVIDkfGLDQEGIYRKSANVldvSKLKEEIDKDpanismil---pskphsdsDIY 545 baker's yeast
XP_499681 556 YGTPIEDLLdyeg-gtvPRAVYQCVQAIDnfGLEVEGIYRANGNNsqiQEIKHLFDTDpskvdll-----hpsdnlnDIH 629 Yarrowia lipolytic...
XP_964714 543 FGVSLSKLYerdg-lavPMVVYQCIQAVDlfGLGLEGIYRLSGSVphvNKLKTLFDTDsgssnldf---rnpenffhDVN 618 Neurospora crassa ...
NP_595866 504 FGARLDAIIlreh-sniPNIVMQCTSQVEnfGLNLQGIYRVPSSSarvNMLRSQFENNpllqlht------pedyenDVH 576 Schizosaccharomyce...
XP_718549 476 FGASIEDVIqfagvdnvPLIVHKCIEVIEsyGLNLVGIYRISSNQsqvNKLKESIDANftnyltigkdidpsnvyesEVF 555 Candida albicans S...
Feature 1           #   #                                                                    #
EAL20009  674 VVCGALKLWFRELPEPLLTyGLYNAFIEAARYDNDRLRHIRLHEQVNeLPDPNYATLKFFMGHLDRIRRKESINQMSVSN 753 Cryptococcus neofo...
586378    546 LVGSLLKTFFASLPDSVLPkALSSEIKVCLQIEDPTTRKNFMHGLIYnLPDAQYWTLRALVFHLKRVLAHEAQNRMNLRA 625 baker's yeast
XP_499681 630 SVASALKLYFRELPDCLLTkELHQEFIDGAMIENAIQRRDALHGTVNkLPDANYTTLRYLIFHLYRIQEREAINRMSVVN 709 Yarrowia lipolytic...
XP_964714 619 SVAGLLKQFFRDLPDPLLTkEHYASFIEAAKNEDEVIRRDSLHAIINsLPDPNYATLRALTLHLHRVINNSSVNRMSSQN 698 Neurospora crassa ...
NP_595866 577 AVADLLKIFFRELREPLIPdNHQRDFIDAGNVEDESRRRDAVHRAINdLPDANYSTIRHLTIHLAKIKENSDVNKMSTNN 656 Schizosaccharomyce...
XP_718549 556 CVASLLKLYFSSLPEPLFTsAASKSFIETVKSTDEHFIAKKLHQLVFgLPDGAYFTLRSLMFHLNKVAQHESENRMNAKS 635 Candida albicans S...
Feature 1       ##                       #              
EAL20009  754 LSIVFGPTLLgappeegglnlehMSFQCKAIETILDKYHEIF 795 Cryptococcus neoformans var. neoformans B-3501A
586378    626 LCIIWGPTIApanpd----dandVNFQIMAMEVLLEVSDQAF 663 baker's yeast
XP_499681 710 LGIVWGPTLMntdyg----nvaeMGFQGRVIETILVNAYVIF 747 Yarrowia lipolytica CLIB122
XP_964714 699 LAIVFGPTLMgtagpg--aniadAGWQVRVVDTILQNTYQIF 738 Neurospora crassa N150
NP_595866 657 LAIIWGPTIIkqat------ipeISSFSRTIEILIDYCFTIF 692 Schizosaccharomyces pombe 972h-
XP_718549 636 LAIIWGPVLFndsst----saqdLSYKTKVVEELMAIATDIF 673 Candida albicans SC5314

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