Conserved Protein Domain Family
RhoGAP_GMIP_PARG1

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cd04378: RhoGAP_GMIP_PARG1 
RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Statistics
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PSSM-Id: 239843
Aligned: 8 rows
Threshold Bit Score: 377.919
Created: 12-Apr-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative GTPasecatalytic
Feature 1:putative GTPase interaction site [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                            #                                    #   #
AAH77287   728 FGRDFsetalrSPDHIPFLIRKCVSEIEERALIMKGIYRVNGVKTRVEKLCQAFENGKELVELSQASPHDLSNVLKLYLR 807  African clawed frog
XP_694162  550 FGTEFsslpreTQDSVPFVVLRCTEEIENRALGVQGVYRISGSKPRVLKLCQAFEIQKDQVDLSDLSPHDITSVLKHFFK 629  zebrafish
XP_423689  674 FGIDFtqvprdFPEEVPFIVVKCTSEIEARALGVQGIYRISGSKARVEKLCQAFENGRSLVELSEHSPHDITGVLKHFLK 753  chicken
AAH59184   735 FGIDFaqvvknSPDGIPFIIKKCTSEIESRALTIKGIYRVNGAKSRVEKLCQAFENGKDLVELSDLHPHDISNVLKLYLR 814  zebrafish
NP_004806  669 FGAEFtqvakkEPDGIPFILKICASEIENRALCLQGIYRVCGNKIKTEKLCQALENGMHLVDISEFSSHDICDVLKLYLR 748  human
XP_422329 1020 FGVEFaqaaksVPDGIPFIIKKCTSEIESRALNVKGIYRVNGAKSRVEKLCQAFENGKDLVELSELYAHDISNVLKLYLR 1099 chicken
NP_057657  549 FGVDFlqlprdFPEEVPFVVTKCTAEIEHRALDVQGIYRVSGSRVRVERLCQAFENGRALVELSGNSPHDVSSVLKRFLQ 628  human
AAH73321   561 FGVDFsqfpryFPEEVPFIIVRCTAEIEQRALGQQGLYRISGAKARVEKLLQAFENGRELVDLSGHSPHDITSSLKHFLK 640  African clawed frog
Feature 1                                                                                      
AAH77287   808 QLPEPLIPfRLYNGLMGLakeslrgtetgkgpr---lqdkgpntetdvlsIVVQLKELLQdLPSENRTTLQYLVKHLCRV 884  African clawed frog
XP_694162  630 ELPEPLLTfDLYNDFIAVgkeiqrlsekd----------haaespgivenIVRRLRELIGrLPVCNNITVQHMMAHLNRV 699  zebrafish
XP_423689  754 ELSGPILLyQLYDNLIALakelqkagee------------kvdctsfpsdPIQSMKDLLSkLPGSNYNTLRHLIAHLYRV 821  chicken
AAH59184   815 QLPEPLILyRYYNDVIGLaketqnmdktdsake--ksageqlglstelkrVLFKVRDLLRqLPAPHYKTLQFLITHLHRV 892  zebrafish
NP_004806  749 QLPEPFILfRLYKEFIDLakeiqhvneeqetkknsledkkwpnmcieinrILLKSKDLLRqLPASNFNSLHFLIVHLKRV 828  human
XP_422329 1100 QLPEPLILfRLYNEFIGLakesqsvneewdakqaspkskkrqsicielnrIIIKIKDLLKqLPVPNYNTLQYLIGHLHRV 1179 chicken
NP_057657  629 ELTEPVIPfHLYDAFISLaktlhadpgd------------dpgtpspspeVIRSLKTLLVqLPDSNYNTLRHLVAHLFRV 696  human
AAH73321   641 QLPDSVVPyQLYEQFMAFsrdyledt----------------kenetghsAIHQMKELLCrMPHSHYNTLRHLTAHLYRV 704  African clawed frog
Feature 1                  #  ##                             #         
AAH77287   885 SEqeQLNKMSPSNLGIVFGPALMRprptd---atvsLSSLVDYPHQARIVETLIIF 937  African clawed frog
XP_694162  700 AEqfEDNKMSPGNLGIVFGPTLLRplvs----gdvsMIALLETSYQALLVEFMISN 751  zebrafish
XP_423689  822 AEkyEENKMSPNNLGIVFGPTLIRpgsg----sdvsMSCLVDSGYQAQIVEFLIQN 873  chicken
AAH59184   893 SEqaEENKMTASNLGIIFGPTLIKprhle---aevsLSSLVDYPHQARMVELLIKH 945  zebrafish
NP_004806  829 VDhaEENKMNSKNLGVIFGPSLIRprptt---apitISSLAEYSNQARLVEFLITY 881  human
XP_422329 1180 TEqsDENKMSASNLGIIFGPTLIRprqtd---atvsLSSLVDYPYQARVVELLITY 1232 chicken
NP_057657  697 AArfMENKMSANNLGIVFGPTLLRppdgpraasaipVTCLLDSGHQAQLVEFLIVH 752  human
AAH73321   705 SErfEDNKMNPNNLGIIFGPTLIRplpg----qdisVNCLIDTGYQSQAVEFLINN 756  African clawed frog

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