Conserved Protein Domain Family
ScAspRS_mt_like_N

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cd04321: ScAspRS_mt_like_N 
ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for S. cerevisiae mtAspRS result in a "petite" phenotype typical for a mutation in a nuclear gene that results in a non-functioning mitochondrial protein synthesis system.
Statistics
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PSSM-Id: 239816
Aligned: 17 rows
Threshold Bit Score: 99.6998
Created: 14-Jul-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative dimerputative
Feature 1:putative dimer interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #                   #                                                #    
NP_015221  49 KIVLNGWIEQKPKRvgknlIFGLLRDSNg-DIIQLVDnk-----------------slLKGFT---------LEDVVQAV 101 baker's yeast
XP_505907  64 KVTLQGWIHKKPRKvsknlTFASLRDTNg-DIIQLVDsns---------------psmLRSMK---------PESAVVVE 118 Yarrowia lipolytic...
XP_447053  44 DIVLNGWIDSKPKRiskslIFGQLRDSNg-DRVQLVDtn-----------------slLRKCK---------VEDVVQVR 96  Candida glabrata C...
BAE59237   91 EVVLHGYLGVRKDLsk-klAFVRLTDPTmrHSIQLVSlakng------------alekLKAVR---------ANSPVAVR 148 Aspergillus oryzae
AAS54696   49 PAIINGWIDRKPRKvgkglVFGSLRDINg-DKIQLVDsq-----------------alLKQSH---------VEDAVQIE 101 Ashbya gossypii AT...
EAS30089   89 RVTLHGYLGRRTDIgk-kmSFVRLSNPPltQTVQVISfskse------------afdkLRSIE---------ANSPVVVR 146 Coccidioides immit...
CAE76417   56 KVTVHGFLLRRRVKss-klVFADIQVENg-PSVQVTStfkedgsp------eqlvtkaLRAVP---------LYSPVSVT 118 Neurospora crassa
XP_751992  93 EVQLHGYLGPRSDLsk-klSFARLTDPTmkHSIQLVSfikns------------plekLRSIN---------ANSPVVVR 150 Aspergillus fumiga...
CAG59986   44 DIVLNGWIDSKPKRiskslIFGQLRDSNg-DRVQLVDtn-----------------slLRKCK---------VEDVVQVR 96  Candida glabrata C...
CAA19270   17 KVSIQGWLVATSRQvsksiSFHQLRDTHg-TILQLLStdkiilqqkreplvsstdfsqQKSTSvmrtlssipPESVVQVT 95  fission yeast
Feature 1                                           # 
NP_015221 102 GILSLKRklsn-----------edaDEYEVQLEDITVLNA 130 baker's yeast
XP_505907 119 GVVAKQRta--------------kkGVFDLVVSSSSVLNE 144 Yarrowia lipolytica CLIB122
XP_447053  97 GKVQLKRetgss---------nldnKKFEVVVDHVKTLNA 127 Candida glabrata CBS 138
BAE59237  149 GKVKAKQakgse---------mektDPWEIQVDDIRTLND 179 Aspergillus oryzae
AAS54696  102 GKLVQKRlked-----------ektPEYEIQLTSLRTLNG 130 Ashbya gossypii ATCC 10895
EAS30089  147 GILQSKIanskghtqeptvdtegniNSVEIALEDVQCLND 186 Coccidioides immitis RS
CAE76417  119 GTVARLHg-----------------NRIDLNLDRIQSLNA 141 Neurospora crassa
XP_751992 151 GIVQPKKtkgsd---------teqsDCWEVHIADIDPLNE 181 Aspergillus fumigatus Af293
CAG59986   97 GKVQLKRetgss---------nldnKKFEVVVDHVKTLNA 127 Candida glabrata CBS 138
CAA19270   96 GKLQRRPehdr-----------rpgNEFELHVEDVKLLNV 124 fission yeast

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