1X56


Conserved Protein Domain Family
PhAsnRS_like_N

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cd04319: PhAsnRS_like_N 
Click on image for an interactive view with Cn3D
PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Statistics
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PSSM-Id: 239814
Aligned: 5 rows
Threshold Bit Score: 162.308
Created: 17-Jul-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative dimerputative
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:putative dimer interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #                 #                              #                        
1X56_A       18 KVRLAGWVYTNMRVGKKIFLWIRDSTGIVQAVVaknvvgeETFEKAKk--LGRESSVIVEGIVKADERAPGGAEVHVEKL 95  Pyrococcus horik...
AAL64579     20 RVTLRGWVYRKRVLKEKAFILLRDSTGVIQLVFp-----rERLKDAEe--LNLESSIVVTGALVREPRAPGGVELHVESV 92  Pyrobaculum aero...
Q5JHC1       18 KVKLAGWVYRKREVGKKVFIVLRDSSGIVQVVFskd-lneEAYREAKk--VGIESSVIIEGTVKADPRAPTGAEVQGEKL 94  Thermococcus kod...
YP_183172    18 KVKLAGWVYRKREVGKKVFIVLRDSSGIVQVVFskd-lneEAYREAKk--VGIESSVIIEGTVKADPRAPTGAEVQGEKL 94  Thermococcus kod...
ZP_01393226  19 QVTVRGWVYRRRDLGDKAFVVVRDSTGIIQAVFt-----pESPGHALarkVTVESSVIVGGALREDPRAPGGKEIAGRNI 93  Thermofilum pend...
Feature 1          #                         
1X56_A       96 EVIQAVSEFPIpenpeqaspelLLDYRHL 124 Pyrococcus horikoshii
AAL64579     93 DWAYIGEPYPInedavvadseyLLDVRHL 121 Pyrobaculum aerophilum str. IM2
Q5JHC1       95 QIIQNVDFFPItkda---sdefLLDVRHL 120 Thermococcus kodakarensis KOD1
YP_183172    95 QIIQNVDFFPItkda---sdefLLDVRHL 120 Thermococcus kodakarensis KOD1
ZP_01393226  94 EIVGLAENFPIrrda---srefLLEVRHL 119 Thermofilum pendens Hrk 5

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