Conserved Protein Domain Family
EcAsnRS_like_N

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cd04318: EcAsnRS_like_N 
EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. S. cerevisiae mtAsnRS can charge E.coli tRNA with asparagines. Mutations in the gene for S. cerevisiae mtAsnRS has been found to induce a "petite" phenotype typical for a mutation in a nuclear gene that results in a non-functioning mitochondrial protein synthesis system.
Statistics
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PSSM-Id: 239813
Aligned: 114 rows
Threshold Bit Score: 71.0573
Created: 15-Jul-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative dimerputative
Feature 1:putative dimer interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #                 #                                               #       
NP_009953  33 PISINGWIKSIRLLkriaFLDLQDGTsvNPLRIVIpltntde-------------------vqflkiLKTGQTLSISNAT 93  baker's yeast
XP_390973  51 DVEVSGWVRSVRKSsgvrFIDITDGSsmRPVQVVVdksl-------------------------aadMRPGAAVRLKGTW 105 Gibberella zeae PH-1
EAQ83286   49 DVTVNGFVRSVRSMkahqFVALGDGSslAPLQALVradraeerspfqkkyqtpelspyyaalaaenfQSIPSLLRLRSEA 128 Chaetomium globosu...
XP_503562  39 PVTINGWIKSVQKLknvaFLNISDGNcaQGVMAVLqpdq------------------------vtsdLTTGACVSVKGNL 94  Yarrowia lipolytic...
AAW43320   63 PVEVNGWIKSVRAHknvaFVEVSDGStgENIQAVLkgks------------------------kaegLSIGASAKLKGRL 118 Cryptococcus neofo...
BAE56222   49 EIKLNGFIRSVRKQkrfaFAEISDGStiEPIQAFLrpaq-------------------------aaeLSTGTAVEISGVW 103 Aspergillus oryzae
XP_958075  79 NVVVQGYVRSVRGMkthrFVSLGDGSslAPLQAVVpvdtn-----------------------qaegLAIGAAVRLTGKW 135 Neurospora crassa ...
EAS36548   48 EVVVRGLVRSVRKQkhwaFAEISDGStiQPVQAILspeq-------------------------aadLTTGGAVEISGVW 102 Coccidioides immit...
NP_499478  12 TKTLDGWAKSVQKSgknvFVKIDKGRagEPIQLVAnkei-------------------------gqeIRVGSAIRATGSL 66  nematode
EAT78057   70 SLTVNGYVRTVRKQkriaFAAIGDGStlQTVQAVLppql-------------------------aegLSTGVAVTVSGKW 124 Phaeosphaeria nodo...
Feature 1                             # 
NP_009953  94 WQSTpn---rkQPFELQIKNPVKSIK 116 baker's yeast
XP_390973 106 VDESgkktlasSSAQLPDTKGECETS 131 Gibberella zeae PH-1
EAQ83286  129 IASLt------QFFAGRSFTQTHPPI 148 Chaetomium globosum CBS 148.51
XP_503562  95 VSSQgk----kQGLELQAESVKVTGT 116 Yarrowia lipolytica CLIB122
AAW43320  119 EQSRgr----gQDVELVVEDAQVLGT 140 Cryptococcus neoformans var. neoformans JEC21
BAE56222  104 KACPpg---keQTHELQTTDVNVLGK 126 Aspergillus oryzae
XP_958075 136 VPSPga----sQSHEMQVTQVDILGP 157 Neurospora crassa OR74A
EAS36548  103 TPSPgr----nQSHELKATDVKLVGE 124 Coccidioides immitis RS
NP_499478  67 EHSRga----qQEMEFVAEQLKVVGN 88  nematode
EAT78057  125 TPSQgq----gQSHELQVDDVRILGE 146 Phaeosphaeria nodorum SN15

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