1KAP,1SMP


Conserved Protein Domain Family
ZnMc_serralysin_like

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cd04277: ZnMc_serralysin_like 
Click on image for an interactive view with Cn3D
Zinc-dependent metalloprotease, serralysin_like subfamily. Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.
Statistics
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PSSM-Id: 239804
Aligned: 42 rows
Threshold Bit Score: 100.183
Created: 26-May-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active site
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1SMP; Serratia marcescens metalloprotease coordinates zinc
  • Comment:consensus motif: HEXXHXUGUXH U= bulky hydrophobic
  • Comment:coordinates zinc, contains catalytic Glu
  • Citation:PMID 8253063

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                       
1KAP_P       63 VLTLSYSFLtkpndffntpwkyvsdiyslgkfsafsaQQQAQAKLSLQSWSDvtNIHFVDAgqg--dqgDLTFGNFsss- 139 Pseudomonas aeru...
1SMP_A       55 PVKLTFSFPdykfsstnva--------gdtglskfsaEQQQQAKLSLQSWADvaNITFTEVaag--qkaNITFGNYsqdr 124 Serratia marcescens
ZP_01014177  29 RRTVTYQFEvsqpgdlwys---------ysgwtafspDEKSVVRFLLETVETflNVDFVEVsgn--rdpDLNLGKVtm-- 95  Rhodobacterales ...
ABB25035     25 DDILDIYIHndagpvtisggsf---gsqdintvkwdpQDEQFLRDVVEGIDEsiDLDFNFTsnq--staDVAIFLDteis 99  Synechococcus sp...
ZP_01014175  32 RQQITFAFNdaastfsflnasg---avafsgfeawqlSEILAVRRALAHIETflNVDFVEVsattnpdmDLAFAELdd-- 106 Rhodobacterales ...
ZP_01058620  29 PIQITYQYAggsepgdlpts------adydgwrrmttAEKAAFEDALEHIESylNVDFVQAkrt--sdpDLNVAAIslp- 99  Roseobacter sp. ...
NP_896982    16 DLILDIYISpggephiawddra--qedvetitkkpaeWQYKVMREAMERVNRefDITIDEVeye--qlsDTQIKLTtvpn 91  Synechococcus sp...
NP_895117    24 TETLTYYIHnasgyeevgy--------gygytyshstYEVDYIVSVFNSIDThiDLDFTRVyty--sgsDLDIYNLsghs 93  Prochlorococcus ...
CAE20263     23 DKTFRVYFHtqegpvtvslgn----spqvitalspsdAWLLFATNQLAKISNaaDVYFQRVyds--tntDISFYYDttid 96  Prochlorococcus ...
AAZ58232     81 NRQIKVYLSnggdelidinlge--serkkyyslkpenWQKSYVIDSLEKINEfiDIDLKLVskk--deaDYTIVISplad 156 Prochlorococcus ...
Feature 1                                                                         ##  #     #   
1KAP_P      140 -------------vggAAFAFLPdvpd--------alkGQSWYLINssysanvnpangnyGRQTLTHEIGHTLGLSHPGD 198 Pseudomonas aeru...
1SMP_A      125 pg--------hydygtQAYAFLPntiwq-----gqdlgGQTWYNVNqsnvkh--patedyGRQTFTHEIGHALGLSHPGD 189 Serratia marcescens
ZP_01014177  96 ---------------fPGTAGLGgpqysssgtritafdGFAVFNNTidl--------ssgRQNLILHEIGHAMGLDHTFE 152 Rhodobacterales ...
ABB25035    100 ld---------dggdtLGLAVSNrnns-------ngyfWEIFLNEPkfdg------dqdyFRYALIHEIGHTLGLEHPFE 157 Synechococcus sp...
ZP_01014175 107 --------------gtAGYGGWKadtsgs---qitavdSFAVFDRDfdi--------vtdRYGVVLHEIGHALGLRHTFD 161 Rhodobacterales ...
ZP_01058620 100 -------------gavIGSGGYSiryqgd---sitqwdGFVAYDATlnls-------serYTDLLLHELGHAMGLQHPFE 156 Roseobacter sp. ...
NP_896982    92 sdavn--gewirswdnSGVADIYlsmtyqs-glegskyPDAHENPDkythde---wekseWKKIFIHELGHLLGLEHPWD 165 Synechococcus sp...
NP_895117    94 gwrd----tyvgmtwtMGYGAYSw--------------FDIAWLYTgdw---------efDRNTIIHEIGHSLGLDHPGD 146 Prochlorococcus ...
CAE20263     97 lg--------dpsvttFGVAVPNnngg--------rqwTEIFLNGPeiqak-----sedfSNYVFNHELGHALGLEHPHD 155 Prochlorococcus ...
AAZ58232    157 nnflsadpergksgnvLSVSYQSgl-----------ytTETNLDVLdhtdf-----srkmQKATFVHELGHLLGLEHPFD 220 Prochlorococcus ...
Feature 1                                                                       
1KAP_P      199 Ynagegdptya------datyaedtraYSVMSYWeeqntgqdfkgayssAPLLDDIAAIQKLYG 256 Pseudomonas aeruginosa
1SMP_A      190 Ynagegnptyn------dvtyaedtrqFSLMSYWsetntggdngghyaaAPLLDDIAAIQHLYG 247 Serratia marcescens
ZP_01014177 153 Garldpa---------------ydnlhYSLMSYDadptpg----idatiRMMAYDMLALQDIWG 197 Rhodobacterales bacterium HTCC2654
ABB25035    158 Dndgdvvdgit-------dpwkslypeDTVMAYRnpang------rwpnDYTSNDKAALIELWG 208 Synechococcus sp. CC9902
ZP_01014175 162 Sdllpdr---------------fdtnkWSLMAYDrhpgs-----gvasdAMGVFDVLALQDIWG 205 Rhodobacterales bacterium HTCC2654
ZP_01058620 157 Aetpipe--------------qyennlYSLMSYQenpyn-----gehsdALMLFDVLALQDIWG 201 Roseobacter sp. MED193
NP_896982   166 Kddgdwavd-----------gpdveteKTIMGYEsrdas-----gkvmdWFQDVDQRALKQIWG 213 Synechococcus sp. WH 8102
NP_895117   147 Ngynpa-----------------ynsdDTVMSYNegln-------gwsvDWTQSDIDALVSIWG 186 Prochlorococcus marinus str. MIT...
CAE20263    156 Nsdgdvylst--------dpqlsatpeETVMSYRvpesg------vyptDFSINDYNALEQIWG 205 Prochlorococcus marinus str. MIT...
AAZ58232    221 LidddvldpyypenfsylrteplfpyeFTLMGWNgsyvdk---tsyeniWFRNADIKSLEVIWD 281 Prochlorococcus marinus str. NATL2A

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