Conserved Protein Domain Family
AAK_AK-DapG-like

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cd04246: AAK_AK-DapG-like 
AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. In Corynebacterium glutamicum and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and threonine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinase isoenzyme types found in Pseudomonas, C. glutamicum, and Amycolatopsis lactamdurans. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. The B. subtilis 168 AKII aspartokinase is also described as tetrameric consisting of two alpha and two beta subunits. Some archeal aspartokinases in this group lack recognizable ACT domains.
Statistics
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PSSM-Id: 239779
Aligned: 44 rows
Threshold Bit Score: 284.386
Created: 23-Jun-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:putative catalytic residues [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #                                             #                          #  
AAA87318      3 LIVQKFGGTSVgsvekiqNAANraiaek-qkghqVVVVVSAMGk-----STDELVSLAkaisdqpskremdMLLATGEQV 76  Bacillus subtilis
6226837       3 IIVQKFGGTSVkdd-kgrKLALghikeaisegykVVVVVSAMGrkgdpyATDSLLGLLygdqsaispreqdLLLSCGETI 81  Bacillus subtilis
NP_967511     4 LIVQKYGGATLadpekikSVSSriaaq--skensLIVVVSAMGk-----TTNSLIDLAnqvsshpqrremdMLLTVGERI 76  Bdellovibrio bac...
ZP_00953207   5 RLVLKFGGTSManperiaHSASivaaea-ragkqVAVVVSAMAg-----ETDRLLGAAealggglgetetdTVLAAGEQA 78  Oceanicaulis ale...
NP_784688     3 IIVQKFGGTSVkdeaariQALKhvqyav-dqgdkVIVVVSAIGrkgapyATDSLLGLVgaehsrltnreldMLVSVGETI 81  Lactobacillus pl...
YP_075377     3 IIVQKFGGTSVatpegreAVVRrvrqal-ddgyaTVVVVSAMGrqgdpyATDTLIQLAqsagpdlapremdLLLSCGEII 81  Symbiobacterium ...
BAB81384      3 IVVQKFGGTSVstkerrtMVVEkvkgai-nkgylPVVVVSAMGrkgepyATDTLLGLVseefkkenklatdLLMGCGEII 81  Clostridium perf...
EAM98260      3 VLVQKFGGTSVssaerraQVAAkvseav-regysPVVVVSAIGrsgdpyATDTFINLVngitlespkremdLLMSCGEII 81  Desulfitobacteri...
ZP_01189941   3 IIVQKFGGTSLdtqekreIAARhiksav-ergnyPVVVVSAMGrkgdpyATDTLINMVyrvsedidprekdMLMSCGEVI 81  Halothermothrix ...
ZP_00801907   3 IVVQKFGGTSVstkerrtQVINkilqtk-qkqknIVVVVSALGrkgdayATDTLRNLLleenplcslktldLLMSCGEII 81  Alkaliphilus met...
Feature 1                                                                                     # 
AAA87318     77 TISLLSMALqekgYDAVSYTgwqagirteaihgnaritdidtSVLADQLEkgKIVIVAGFQGmt-edCEITTLGRGGSDT 155 Bacillus subtilis
6226837      82 SSVVFTSMLldngVKAAALTgaqagfltndqhtnakiiemkpERLFSVLAnhDAVVVAGFQGat-ekGDTTTIGRGGSDT 160 Bacillus subtilis
NP_967511    77 SMSLVSMALndlgCPAISFTgsqagiftddshvnafikdvkpMRLDEALKnnRVVILAGFQGvspvtKEITTLGRGGSDT 156 Bdellovibrio bac...
ZP_00953207  79 SAALMALALkregFQSQAVMgwslpilvegppggakitdihgEQLDAMLSagVIPVVAGYQGln-aeGRLATLGRGGTDL 157 Oceanicaulis ale...
NP_784688    82 STAVFTELArkqgLNVTAMTghdagivtnddfqnakilrvdpKPITDAFIdaDVVVVTGFQGat-esGHVTTIGRGGSDT 160 Lactobacillus pl...
YP_075377    82 SSVLMAATLtaagIPAVALTggqagiqtdenygnaqivkvdpAPVLSRLKegLVVVVAGFQGvn-aaGEVTTLGRGGSDT 160 Symbiobacterium ...
BAB81384     82 STVVMSDELreaeIEAVPLTggnagiltddnyssadfidinpKLILEVLKegKVPVVAGFQGvd-rnGFLTTLGRGGSDT 160 Clostridium perf...
EAM98260     82 SGVVLTSTLksmgLEAILLTggqagiitndcygdariirvepKGILDHLSegRVVVVTGFQGvt-edGQVTTLGRGGSDT 160 Desulfitobacteri...
ZP_01189941  82 SAVVMVQTLssfgLKARALTgaqagivtdnnfgdssvikvnpEKIMELINsnIIPVIAGFQGvn-mdGEITTLGRGGSDT 160 Halothermothrix ...
ZP_00801907  82 SATLLGSALealgEKVIVLTgaqagiltddhfsnaeiiaideKRSLSYLEkdYIVVVPGFQGat-asGEVTTLGRGGSDT 160 Alkaliphilus met...
Feature 1                                                  #            #                       
AAA87318    156 TAVALAAALKVDkCDIYTDVPGVFTTDPRYVksarKLEGISYDEMLELANLGAGVLHPRAVEFAKNyqVPLEVRSSTETe 235 Bacillus subtilis
6226837     161 SAAALGAAVDAEyIDIFTDVEGVMTADPRVVenakPLPVVTYTEICNLAYQGAKVISPRAVEIAMQakVPIRVRSTYSNd 240 Bacillus subtilis
NP_967511   157 SAVAMAAAFNAErCEILKDVPAVFTADPNIVksarPLSELNYDQLMEMTFWGAKVLHYRSVELAKMrdVTLYIGPASSKt 236 Bdellovibrio bac...
ZP_00953207 158 SAAAVAAAVGAE-CDIYTDVDGVFTTDPRIApeavRVERISHDAMLELAAMGAKVLQTRSVEYAKAkgVTLRVKSSFLPa 236 Oceanicaulis ale...
NP_784688   161 SAAILGAALKAKrVDIFTDVNGMMTADPRLVtharFIKAISYEELANMAHEGAKVIHPRAVEIAEQahVPMRIRSTYQEp 240 Lactobacillus pl...
YP_075377   161 TAAALGGALRAEvVEIYTDVDGVKTADPRLVaearTLSVTTYDEIAQMAHYGAKVVHPRAVEIAMQhrVPIRVRSTFSDn 240 Symbiobacterium ...
BAB81384    161 TAAVLGVALKAEeIEIYTDVDGIMTADPRIVgdaeLINKISYNEVFQLADQGAKVIHPRAVEIAMKgnVTLVIKNTMSTc 240 Clostridium perf...
EAM98260    161 TASALGVALNAEaIDIYTDVEGIMTADPRIVedarILDVVTYNEICHLAHQGAKVIHPRAVEIAMQrnIPIWIKCTFSDa 240 Desulfitobacteri...
ZP_01189941 161 TASVIGAAINASfIEIFTDVEGVMTADPSMVdkakILDKVSYNEVCELAYQGARVLHPRAAEIAMRegIPIRVRSIFNEn 240 Halothermothrix ...
ZP_00801907 161 TATALAVALNAEyVEIYTDVDGIMTADPNVVprarILDQVNYNEVFQMAEKGAKVIHPRAVEIAQKknIPVNIRNTMSEh 240 Alkaliphilus met...
Feature 1                
AAA87318    236 ---aGTLIE 241 Bacillus subtilis
6226837     241 ---kGTLVT 246 Bacillus subtilis
NP_967511   237 s--dGTIVK 243 Bdellovibrio bacteriovorus HD100
ZP_00953207 237 gqsaGTEVT 245 Oceanicaulis alexandrii HTCC2633
NP_784688   241 d-elGTLVT 248 Lactobacillus plantarum WCFS1
YP_075377   241 ---pGTLIT 246 Symbiobacterium thermophilum IAM 14863
BAB81384    241 ---iGTMID 246 Clostridium perfringens str. 13
EAM98260    241 ---rGTLVT 246 Desulfitobacterium hafniense DCB-2
ZP_01189941 241 ---pGTIIQ 246 Halothermothrix orenii H 168
ZP_00801907 241 ---pGTRIH 246 Alkaliphilus metalliredigenes QYMF

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