2AKO


Conserved Protein Domain Family
AAK_G5K_ProB

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cd04242: AAK_G5K_ProB 
Click on image for an interactive view with Cn3D
AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requirement and the proline-triggered aggregation are greatly diminished and abolished, respectively, and more proline is needed for inhibition. Although plant and animal G5Ks are part of a bifunctional polypeptide, delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR; ProA); bacterial and yeast G5Ks are monofunctional single-polypeptide enzymes. In this CD, all three domain architectures are present: G5K, G5K+PUA, and G5K+G5PR.
Statistics
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PSSM-Id: 239775
Aligned: 127 rows
Threshold Bit Score: 262.765
Created: 26-Sep-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:nucleotide binding site [chemical binding site]
Evidence:
  • Structure:2AKO; Campylobacter jejuni glutamate 5-kinase with bound ADP
  • Comment:defined by 3.5 Angstrom contacts

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #                                                                       
2AKO_D        3 RIVVKVGSHVISEentls--ferlKNLVAFLAKLXE-KYEVILVTSAAISAGHTKLdidrk--------------nlink 65  Campylobacter je...
NP_191120    16 RIVVKVGTAVVTGkggrl-algrlGAICEQLAELNSdGFEVILVSSGAVGLGRQRLryrqlvnssfa--dlqkpqmeldg 92  thale cress
1709536      81 RVVVKLGSAVITRedecglalgrlASIVEQVSELQQsGRQMLIVSSGAVAFGRQKLrqelvmsmsmrqtlrgpsgmtadk 160 Caenorhabditis e...
AAB67875     16 RLIVKVGTAVVTRadgrl-algrlGALCEQLQELNSqGYEVILVTSGAVGVGRQRLryrkllnssfl--dlqkpqteldg 92  Lycopersicon esc...
AAU90213     16 RVIIKVGTAVVSRqdgrl-algrvGALCEQVKELNSlGYEVILVTSGAVGVGRQRLryrklvnssfa--dlqkpqmeldg 92  Japanese rice
AAO78824      7 RIAVKVGSNVLARrdgtl-dvtrmSALVDQIAELNKsGVEIILISSGAVASGRSEIhpqkkl------------dsvdqr 73  Bacteroides thet...
XP_667417    27 LIVLKVGTSTLTNsrtgklsvsniGALVETVCDLMDkGCRVVLVSSGAVGAGLLHMnirekp------------nklhlk 94  Cryptosporidium ...
NP_662343    10 RIVVKVGTNVITGrngkl-dpailDSLTSQIAALMQdGVEVILVTSGAVSAGRGIVslsgnl------------tpvetr 76  Chlorobium tepid...
YP_095637     2 KIIIKVGTQSILSvdgsp-iysvlNNLVNQIIYLKNlGHQVILVSSGAVGSGRKIAknslgkty---------gdtvgek 71  Legionella pneum...
ZP_01059848   5 RVVIKVGTNVMTNrnnri-vgpvlHELVRQIAELYEkGYQPVLVSSGSAIAGKEVLgecnye------------dastrr 71  Flavobacterium s...
Feature 1                                                                                       
2AKO_D       66 QVLAAIGQPFLISVYNELLAkfnkLGGQILLTgKDFDSRkATKHAKNAIDXXINl-GILPIINENDATAi-----EEIVF 139 Campylobacter je...
NP_191120    93 KACAGVGQSSLMAYYETMFDqldvTVAQMLVTdSSFRDKdFRKQLSETVKAMLRm-RVIPVFNENDAIStrrapyKDSTG 171 thale cress
1709536     161 RACAASGMPGLMSLYEQLFQqygiTVAQVLLTkPDIDDDqRRKNLQATIESLLSl-NIIPIVNANDAVAp----dPKLNM 235 Caenorhabditis e...
AAB67875     93 KACAAVGQNGLMALYDSLFSqldvTSAQLLVTdNDFRDPdFRRQLNDTVNSLLSl-KVIPIFNENDAIStrrapyEDSSG 171 Lycopersicon esc...
AAU90213     93 KACAAVGQSGLMALYDMLFNqldvSSSQLLVTdSDFENPkFREQLTETVESLLDl-KVIPIFNENDAIStrkapyEDSSG 171 Japanese rice
AAO78824     74 QLFSAVGQAKLINRYYELFRehgiAVGQVLTTkENFSTRrHYLNQKNCMTVMLEn-GVIPIVNENDTISv-----SELMF 147 Bacteroides thet...
XP_667417    95 HAIAAIGQPLLMRVYEDFFSmrgaKVAQLLMTrSDFVNKdRFIDFKNTLLDLIHw-NVVPIINENDSVTt-----IDLHF 168 Cryptosporidium ...
NP_662343    77 QVLAATGQIRLINAYNDRFKkhgiTGAQLLVTkGDFRDRqHYLNMRTCFEALLQq-KIVPIVNENDAVAi-----TELMF 150 Chlorobium tepid...
YP_095637    72 QLLASIGQPELMNLYSSLFKneniLVSQLLLTkQDFHTRqHYLNIARLLTELLKhqNIIPIVNENDSVAi-----EELMF 146 Legionella pneum...
ZP_01059848  72 QIFSSVGQPRMMRHYYTLFNsfgmHCAQLLATkRDFAPGkHRENMINCYEGLLSe-GIIPIANEDDAVSl-----TMSMF 145 Flavobacterium s...
Feature 1                               ###  ##                                           # #   
2AKO_D      140 G--DNDSLSAYATHFFDADLLVILSDIDGFYDKNPsefsdakRLEKIt----hIKEEWLqat----iktGSEHGTGGIVT 209 Campylobacter je...
NP_191120   172 IfwDNDSLAALLSLELKADLLILLSDVEGLYTGPPsds-tskLIHTFik--ekHQDEITfg-------eKSKLGRGGMTA 241 thale cress
1709536     236 HisDNDSLAARLSAEIEAELLIILSNVNGVYTGPPdle-gsrLLYTYvp---sENSGVTfg-------aNSKFGTGGMES 304 Caenorhabditis e...
AAB67875    172 IfwDNDSLAALLALELKADLLVLLSDVDGLYSGPPrdp-dskLIYTYik--eiHERVITfg-------dKSRVGRGGMTA 241 Lycopersicon esc...
AAU90213    172 IfwDNDSLAGLLALELKADLLILLSDVDGLYSGPPsep-sskIIHTYik--ekHQQEITfg-------dKSRVGRGGMTA 241 Japanese rice
AAO78824    148 T--DNDELSGLIASMMDAQALIILSNIDGIYNGSPsdp-asaVIREIehg-kdLSNYIQa--------tKSSFGRGGMLT 215 Bacteroides thet...
XP_667417   169 G--DNDTLAAYCAIAISADWLILATDVDALFTKNPrlhrdavPILKVn----nIDSIIHmendvsdencGTNFGTGGMRT 242 Cryptosporidium ...
NP_662343   151 T--DNDELSGLIASMLQVDANIILSNVDGLFDTQSeg---npVIEEIdpgtknFSQYIRp--------gKSEFGRGGMLT 217 Chlorobium tepid...
YP_095637   147 T--DNDELAGLIAAQINADYLILLTNVDGVFTSHPndp-eskLINTIdp--nsGWPNVSa--------vKSKLGRGGMVS 213 Legionella pneum...
ZP_01059848 146 T--DNDELASLVAELINADALILLTDTDGLYTGHPddd-dseKLTEVhpe-qkVEQYVQen------nkAEGEGRGGMKS 215 Flavobacterium s...
Feature 1       #                                                  
2AKO_D      210 KLKAAKFLLEhNKKXFLASGfdlsVAKTFLledk---------qigGTLFE 251 Campylobacter jejuni
NP_191120   242 KVKAAVNAAYgGVPVIITSGyaaeNISKVLrgl-----------rvGTLFH 281 thale cress
1709536     305 KVTACVNALNnGVTTVITNGlaqdAITDAVagk-----------kiGTMFC 344 Caenorhabditis elegans
AAB67875    242 KVKAAMYAAYaGIPVVITSGfatdNIIKVLhge-----------riGTLFH 281 Lycopersicon esculentum
AAU90213    242 KVKAAVLASNsGTPVVITSGfenrSILKVLhge-----------kiGTLFH 281 Japanese rice
AAO78824    216 KTNIARKVADeGITVIIANGkrdnILVDLLqqpd---------dtvCTRFI 257 Bacteroides thetaiotaomicron VPI-5482
XP_667417   243 KIFAARIAAAaGISTFLVNGshpnRLLQLVdsidfkmnkahnnnaiSSYYS 293 Cryptosporidium hominis TU502
NP_662343   218 KCNIAHKLSRlGITVHIANGttpgILQTIAhgg-----------kaGTKFI 257 Chlorobium tepidum TLS
YP_095637   214 KLDTARKMAGlGINTVIANVnvesIVPKILnre-----------avGTIIL 253 Legionella pneumophila subsp. pneumophila str...
ZP_01059848 216 KLKIAKETARkDITCYIANGkkpnVIVDLLegk-----------eiGTKFQ 255 Flavobacterium sp. MED217

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